Skip to content
Snippets Groups Projects
Commit e1073c63 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
Browse files

change location of .nf to match repo change

parent e1cdf7c6
Branches
Tags
No related merge requests found
...@@ -82,7 +82,7 @@ main(){ ...@@ -82,7 +82,7 @@ main(){
cd rna-seq cd rna-seq
# run pipeline on replicate RIDs in parallel # run pipeline on replicate RIDs in parallel
while read repRID; do echo ${repRID}; sleep 30; done < "../${rid}_studyRID.csv" | xargs -P 5 -I {} nextflow -q run workflow/rna-seq.nf --repRID {} --source dev --deriva /project/BICF/BICF_Core/shared/gudmap/test_data/auth/credential.json --bdbag /project/BICF/BICF_Core/shared/gudmap/test_data/auth/cookies.txt --dev false --upload true --track true --email ${email} -with-report ./output/{}_report.html -with-timeline ./output/{}_timeline.html while read repRID; do echo ${repRID}; sleep 30; done < "../${rid}_studyRID.csv" | xargs -P 5 -I {} nextflow -q run rna-seq.nf --repRID {} --source dev --deriva /project/BICF/BICF_Core/shared/gudmap/test_data/auth/credential.json --bdbag /project/BICF/BICF_Core/shared/gudmap/test_data/auth/cookies.txt --dev false --upload true --track true --email ${email} -with-report ./output/{}_report.html -with-timeline ./output/{}_timeline.html
} }
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment