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GUDMAP_RBK
data_hub_scripts
Commits
e1cdf7c6
Commit
e1cdf7c6
authored
Mar 08, 2021
by
Venkat Malladi
Browse files
Update location of nf file.
parent
9654e9e1
Changes
1
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Inline
Side-by-side
scripts/run_rep.sh
View file @
e1cdf7c6
...
...
@@ -51,7 +51,7 @@ main(){
# run pipeline on replicate RIDs in parallel
echo
${
rid
}
nextflow
-q
run
workflow/
rna-seq.nf
--repRID
${
rid
}
--source
dev
--deriva
/project/BICF/BICF_Core/shared/gudmap/test_data/auth/credential.json
--bdbag
/project/BICF/BICF_Core/shared/gudmap/test_data/auth/cookies.txt
--dev
false
--upload
true
--track
true
--email
${
email
}
-with-report
./output/
${
rid
}
_report.html
-with-timeline
./output/
${
rid
}
_timeline.html
nextflow
-q
run rna-seq.nf
--repRID
${
rid
}
--source
dev
--deriva
/project/BICF/BICF_Core/shared/gudmap/test_data/auth/credential.json
--bdbag
/project/BICF/BICF_Core/shared/gudmap/test_data/auth/cookies.txt
--dev
false
--upload
true
--track
true
--email
${
email
}
-with-report
./output/
${
rid
}
_report.html
-with-timeline
./output/
${
rid
}
_timeline.html
}
...
...
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