Update location of nf file.

scripts/run_rep.sh

@@ -51,7 +51,7 @@ main(){
 
   # run pipeline on replicate RIDs in parallel
   echo ${rid}
-  nextflow -q run workflow/rna-seq.nf --repRID ${rid} --source dev --deriva /project/BICF/BICF_Core/shared/gudmap/test_data/auth/credential.json --bdbag /project/BICF/BICF_Core/shared/gudmap/test_data/auth/cookies.txt --dev false --upload true --track true --email ${email} -with-report ./output/${rid}_report.html -with-timeline ./output/${rid}_timeline.html
+  nextflow -q run rna-seq.nf --repRID ${rid} --source dev --deriva /project/BICF/BICF_Core/shared/gudmap/test_data/auth/credential.json --bdbag /project/BICF/BICF_Core/shared/gudmap/test_data/auth/cookies.txt --dev false --upload true --track true --email ${email} -with-report ./output/${rid}_report.html -with-timeline ./output/${rid}_timeline.html
 
 }