Commits · 662ba08065afeaab45cf3e2b59a37f6a82f0c717 · GCRB / TFSEE

Jun 02, 2017
- Update matrix analysis to look at TFS and clossest genes and enhancers expression. · 662ba080
  Venkat Malladi authored 7 years ago
  
  662ba080
May 31, 2017
- Update histone analysis. · 1dd72c6a
  Venkat Malladi authored 7 years ago
  
  1dd72c6a
May 26, 2017
- Update histone analysis. · e1db3029
  Venkat Malladi authored 7 years ago
  
  e1db3029
Apr 10, 2017
- Histone centered processing. · 9c3858b4
  Venkat Malladi authored 7 years ago
  
  9c3858b4
Apr 03, 2017
- Add in overlap of enhacners. · cffef5f6
  Venkat Malladi authored 7 years ago
  
  cffef5f6
Mar 30, 2017
- Added in rank order anaylsis, and analysis for cluster 3. · f1d15a09
  Venkat Malladi authored 7 years ago
  
  f1d15a09
Mar 24, 2017
- Update matrix analysis for better clustering. · d3461a96
  Venkat Malladi authored 7 years ago
  
  d3461a96
Mar 23, 2017
- Added analysis of looking at Cluster 3. · 9ad9fcd7
  Venkat Malladi authored 7 years ago
  
  9ad9fcd7
Mar 22, 2017
- First pass at analysis of GRO-seq centered enhancers. · 0a630fb7
  Venkat Malladi authored 7 years ago
  
  0a630fb7
Mar 17, 2017
- Updated Histone only location browswer track. · 04a3b48b
  Venkat Malladi authored 8 years ago
  
  04a3b48b
Mar 07, 2017
- Verifyed that number of enhancers is 4974. · 6a56e408
  Venkat Malladi authored 8 years ago
  
  6a56e408
- Update barplot. · 632f0f38
  Venkat Malladi authored 8 years ago
  
  632f0f38
- Update Enhancer processing. · 2f69ab2e
  Venkat Malladi authored 8 years ago
  
  2f69ab2e
- Fix name rpkm values. · 47afde44
  Venkat Malladi authored 8 years ago
  
  47afde44
- fix syntax. · 202ae5c7
  Venkat Malladi authored 8 years ago
  
  202ae5c7
- Update overlap of enhancers. · ea30a0c5
  Venkat Malladi authored 8 years ago
  
  ea30a0c5
Mar 06, 2017
- Update GRO-seq enhancer processing. · ec5eb1ed
  Venkat Malladi authored 8 years ago
  
  ec5eb1ed
Mar 02, 2017
- Update pysam to account for new syntax. · 6a8c4de2
  Venkat Malladi authored 8 years ago
  
  6a8c4de2
- Update pysam to account for new syntax. · 00dd6e2e
  Venkat Malladi authored 8 years ago
  
  00dd6e2e
Feb 23, 2017
- get 1kb center of enhancer ans figures. · cd3784ba
  Venkat Malladi authored 8 years ago
  
  cd3784ba
- Making 1kb center histone data. · 7010f0ea
  Venkat Malladi authored 8 years ago
  
  7010f0ea
- Update bar plot. · 8435e959
  Venkat Malladi authored 8 years ago
  
  8435e959
- fix plots. · ecec9076
  Venkat Malladi authored 8 years ago
  
  ecec9076
- fixual representation of overlap and bed files for Histone Enhancers. · 5eb1516b
  Venkat Malladi authored 8 years ago
  
  5eb1516b
Feb 21, 2017
- Overlap of enhancers plot. · c8f21f96
  Venkat Malladi authored 8 years ago
  
  c8f21f96
- Update histone centered processing. · 7a9a34d2
  Venkat Malladi authored 8 years ago
  
  7a9a34d2
- Procesing of histone centered enhancers. · 0248c449
  Venkat Malladi authored 8 years ago
  
  0248c449
Feb 09, 2017
- Add processing of cutoff of enhancer elements. · 72f3ea7d
  Venkat Malladi authored 8 years ago
  
  72f3ea7d
Jan 18, 2017
- update code. · 1fc294d0
  Venkat Malladi authored 8 years ago
  
  1fc294d0
- Add in RNA-seq processing. · efc49c07
  Venkat Malladi authored 8 years ago
  
  efc49c07
- Update code for protein coding genes tss. · 9603f55e
  Venkat Malladi authored 8 years ago
  
  9603f55e
Jan 17, 2017
- Show cutoffs for H3K4me3 and H3K27ac marks. · aff20266
  Venkat Malladi authored 8 years ago
  
  aff20266
Jan 10, 2017
- Update processing for histone data. · 905de27d
  Venkat Malladi authored 8 years ago
  
  905de27d
Dec 28, 2016
- Add in potential histone processing. · 38234440
  Venkat Malladi authored 8 years ago
  
  38234440
- Add normalized signal and gene expression. · 4770e11d
  Venkat Malladi authored 8 years ago
  
  4770e11d
Dec 20, 2016
- Update of gro-seq processing. · fcf33e4b
  Venkat Malladi authored 8 years ago
  
  fcf33e4b
Dec 06, 2016
- Update corelation. · f8d9e216
  Venkat Malladi authored 8 years ago
  
  f8d9e216
- Update the enhancers called by gro-seq. · 481e5dee
  Venkat Malladi authored 8 years ago
  
  481e5dee
Dec 02, 2016
- Update the analysis of mimumm rpkm for enhancers. · 1f1bd426
  Venkat Malladi authored 8 years ago
  
  1f1bd426
- Update H3K27ac analysis. · d27b44fc
  Venkat Malladi authored 8 years ago
  
  d27b44fc