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mem_awk_script.sh 1.4 KiB
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Venkat Malladi's avatar
First pass at analysis of GRO-seq centered enhancers.
Venkat Malladi committed
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awk '{
if ($1 ~ /^SUNP_/) print toupper($0);
else if ( $1 ~ /^SSP_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D0_gro-seq_enhancers_1kb_zoops/meme.txt > MEME_op_ES_D0_gro-seq_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^SUNP_/) print toupper($0);
else if ( $1 ~ /^SSP_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D2_gro-seq_enhancers_1kb_zoops/meme.txt > MEME_op_ES_D2_gro-seq_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^SUNP_/) print toupper($0);
else if ( $1 ~ /^SSP_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D5_gro-seq_enhancers_1kb_zoops/meme.txt > MEME_op_ES_D5_gro-seq_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^SUNP_/) print toupper($0);
else if ( $1 ~ /^SSP_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D7_gro-seq_enhancers_1kb_zoops/meme.txt > MEME_op_ES_D7_gro-seq_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^SUNP_/) print toupper($0);
else if ( $1 ~ /^SSP_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D10_gro-seq_enhancers_1kb_zoops/meme.txt > MEME_op_ES_D10_gro-seq_enhancers_1kb_zoops/meme.txt