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mem_awk_script.sh 1.22 KiB
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Venkat Malladi's avatar
Update histone analysis.
Venkat Malladi committed
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awk '{
if ($1 ~ /^HE_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D0_Histone_enhancers_1kb_zoops/meme_out/meme.txt > MEME_op_ES_D0_Histone_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^HE_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D2_Histone_enhancers_1kb_zoops/meme_out/meme.txt> MEME_op_ES_D2_Histone_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^HE_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D5_Histone_enhancers_1kb_zoops/meme_out/meme.txt > MEME_op_ES_D5_Histone_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^HE_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D7_Histone_enhancers_1kb_zoops/meme_out/meme.txt > MEME_op_ES_D7_Histone_enhancers_1kb_zoops/meme.txt

awk '{
if ($1 ~ /^HE_/) print toupper($0);
else print $0;
}'  /Volumes/project/GCRB/Lee_Lab/s163035/Matrix_analysis_PMIT_25842977/Motif/MEME_op_ES_D10_Histone_enhancers_1kb_zoops/meme_out/meme.txt >MEME_op_ES_D10_Histone_enhancers_1kb_zoops/meme.txt