Explore projects

Parameter exploration job runner for the BioHPC nucleus cluster.

Implementations of the Kalata filters described in D.S. O'Kelly, Y. Guo, R.P. Mason. Evaluating online filtering algorithms to enhance dynamic multispectral optoacoustic tomography, Photoacoustics (2020)

Ember.js sbatch script generator. Front-end only.

Quick and dirty singularity bootstrap definitions for all biocontainers.

A list of R packages/libraries required to run pipelines.

Various ODE and SDE models

Instructions to login into BioHPC and adding SSH key to GitHub profile

De novo circular RNA detection from circular viral genome

Multiple Fisher's exact tests for differential alternative splicing detection using RNA-seq data

Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

Scan Singularity container images using a Clair server

An example of ATAC-seq using BioHPC Astrocyte workflow engine.

DeBias decouples global bias from direct interactions in co-orientation and co-localization data.