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Commit ea4028b3 authored by John Lafin's avatar John Lafin
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Update docs with warning about DEA

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...@@ -22,6 +22,13 @@ For rds files, these can contain processed Seurat or SingleCellExperiment ...@@ -22,6 +22,13 @@ For rds files, these can contain processed Seurat or SingleCellExperiment
objects. This workflow will attempt to convert these objects to h5ad files objects. This workflow will attempt to convert these objects to h5ad files
prior to loading them into CELLxGENE. prior to loading them into CELLxGENE.
## Differential expression analysis
Please note that running differential gene expression analysis on groups with
a large number of cells (10,000s of cells in each group) is likely to fail.
This can be avoided by selecting subsets of the population of interest, or
loading a subsampled object.
## Output ## Output
This workflow generates an interactive single cell RNA seq exploration This workflow generates an interactive single cell RNA seq exploration
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...@@ -20,6 +20,14 @@ the session. If you create custom annotations, these will be saved in ...@@ -20,6 +20,14 @@ the session. If you create custom annotations, these will be saved in
a CSV file which can be downloaded. See [here](https://cellxgene.cziscience.com/docs/05__Annotate%20and%20Analyze%20Your%20Data/5_4__Annotating%20Data) a CSV file which can be downloaded. See [here](https://cellxgene.cziscience.com/docs/05__Annotate%20and%20Analyze%20Your%20Data/5_4__Annotating%20Data)
for more information. for more information.
## A note on differential expression analysis
CELLxGENE can run differential expression analysis (DEA) on loaded data.
Please note that running differential gene expression analysis on groups with
a large number of cells (10,000s of cells in each group) is likely to fail.
This can be solved by selecting subsets of the population of interest, or
loading a subsampled object.
## Credits ## Credits
CELLxGENE is developed by the Chan Zuckerburg Institute. More information CELLxGENE is developed by the Chan Zuckerburg Institute. More information
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