commented on
issue#11
"Update image to use R 4.4.0"
at
Astrocyte / Workflows / Strand Lab / cellxgene
Attack surface here is relatively small as this workflow is already containerized. Given the time requirement of refactoring this step, we can leav...
closed
issue
#13
"Improve performance on large datasets"
at
Astrocyte / Workflows / Strand Lab / cellxgene
commented on
issue#13
"Improve performance on large datasets"
at
Astrocyte / Workflows / Strand Lab / cellxgene
h5ad_prepare uses sceasy for conversion. I'd need to reformulate this function to ensure CSC loading....
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f37ef9ec · Do not load in backed mode
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be28098d · fix backed parameter
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4fcfda07 · Use backed mode for data >10GB
opened
issue
#13
"Improve performance on large datasets"
at
Astrocyte / Workflows / Strand Lab / cellxgene
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7b086f88 · Specify slot name; update docs
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841ab1db · Convert SCTAssay -> Assay
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884749ef · Do not name new assay RNA
- ... and 1 more commit. Compare 12088815...884749ef