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John Lafin's avatar
closed issue #11 "Update image to use R 4.4.0" at Astrocyte / Workflows / Strand Lab / cellxgene
John Lafin's avatar
commented on issue#11 "Update image to use R 4.4.0" at Astrocyte / Workflows / Strand Lab / cellxgene

Attack surface here is relatively small as this workflow is already containerized. Given the time requirement of refactoring this step, we can leav...

John Lafin's avatar
closed issue #13 "Improve performance on large datasets" at Astrocyte / Workflows / Strand Lab / cellxgene
John Lafin's avatar
commented on issue#13 "Improve performance on large datasets" at Astrocyte / Workflows / Strand Lab / cellxgene

h5ad_prepare uses sceasy for conversion. I'd need to reformulate this function to ensure CSC loading....

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  • f37ef9ec · Do not load in backed mode
John Lafin's avatar
John Lafin's avatar
John Lafin's avatar
  • 4fcfda07 · Use backed mode for data >10GB
John Lafin's avatar
opened issue #13 "Improve performance on large datasets" at Astrocyte / Workflows / Strand Lab / cellxgene
John Lafin's avatar
John Lafin's avatar
  • 7b086f88 · Specify slot name; update docs
John Lafin's avatar
John Lafin's avatar
John Lafin's avatar
opened issue #12 "Hide CLI element" at Astrocyte / Workflows / Strand Lab / cellxgene