Commits · b5d905220108d688b1e6317cad3a9cea543452ce · Astrocyte / Workflows / BICF / chipseq_analysis

Oct 23, 2017
- Add in xcor step and qc values. · b5d90522
  Venkat Malladi authored 7 years ago
  
  b5d90522
Oct 22, 2017
- update config to not have local step. · b801983f
  Venkat Malladi authored 7 years ago
  
  b801983f
- Convert bam to tagAlign. · 4c00f7ea
  Venkat Malladi authored 7 years ago
  
  4c00f7ea
Oct 20, 2017
- Fix syntax of process name. · bdf276ec
  Venkat Malladi authored 7 years ago
  
  bdf276ec
Oct 17, 2017
- Add in deeptools code to generate QC from deeptools. · 4e68354e
  Venkat Malladi authored 7 years ago
  
  4e68354e
Oct 10, 2017
- Update samtools version and synxtax to fix bugs in last push. · 2948ddca
  Venkat Malladi authored 7 years ago
  
  2948ddca
Oct 09, 2017
- Add in steps to remove dups and filter reads. · 3a9a868b
  Venkat Malladi authored 7 years ago
  
  3a9a868b
Oct 08, 2017
- Remove memory constraints. · 577d7b85
  Venkat Malladi authored 7 years ago
  
  577d7b85
Oct 07, 2017
- Update bwa version to match index. · d14969c6
  Venkat Malladi authored 7 years ago
  
  d14969c6
Oct 06, 2017
- Use python3 for testing the design file and use local for this. · 970fea4b
  Venkat Malladi authored 7 years ago
  
  970fea4b
- Add in trace config and fix varaible of map_reads. · 0205044c
  Venkat Malladi authored 7 years ago
  
  0205044c
Oct 05, 2017
- Rename config file. · 758cf363
  Venkat Malladi authored 7 years ago
  
  758cf363
- Add in maping step with apporpriate configurations. · 14299993
  Venkat Malladi authored 7 years ago
  
  14299993
Oct 04, 2017
- Add in nextflow config for loading modules. · 38f026a1
  Venkat Malladi authored 7 years ago
  
  38f026a1