Add in nextflow config for loading modules.

nextflow.config

-process.executor='slurm'
-process.queue='super'
-process.time='5d'
-
-

workflow/conf/biohpc.conf

+process {
+  executor = 'slurm'
+  queue='super'
+
+  // Process specific configuration
+  $checkDesignFile {
+    module = ['python/3.6.1-2-anaconda']
+  }
+  $trim_galore {
+    module = ['python/3.6.1-2-anaconda', 'trimgalore/0.4.1']
+    cpus = 32
+  }
+}

workflow/nextflow.config

+profiles {
+  standard {
+    includeConfig 'conf/biohpc.config'
+  }
+}