Commits · b47a158eba7721960b2aa7ff2166b2e2760a8400 · Astrocyte / Workflows / BICF / chipseq_analysis

Jan 11, 2019
- Fix cod syntax. · b47a158e
  Venkat Malladi authored 6 years ago
  
  b47a158e
- Fix variable name. · bb9b42c8
  Venkat Malladi authored 6 years ago
  
  bb9b42c8
- Fix array rename. · d3003427
  Venkat Malladi authored 6 years ago
  
  d3003427
- Fix trim reads input. · fac677c3
  Venkat Malladi authored 6 years ago
  
  fac677c3
- Change to ifelse. · bf2be6c1
  Venkat Malladi authored 6 years ago
  
  bf2be6c1
- Change diffbind peaks. · d68be9e2
  Venkat Malladi authored 6 years ago
  
  d68be9e2
Jan 10, 2019
- Make csv to tsv. · ad8a4c25
  Venkat Malladi authored 6 years ago
  
  ad8a4c25
- reduce to one page. · 29ea563e
  Venkat Malladi authored 6 years ago
  
  29ea563e
- Fix test peaks. · 1ca8372e
  Venkat Malladi authored 6 years ago
  
  1ca8372e
Jan 09, 2019
- Update configuration. · 96069f62
  Venkat Malladi authored 6 years ago
  
  96069f62
- Fix annotate length. · b1dbf288
  Venkat Malladi authored 6 years ago
  
  b1dbf288
- Fix number of peaks. · 785478ce
  Venkat Malladi authored 6 years ago
  
  785478ce
Jan 08, 2019
- Fixed test data and test output. · 200ded13
  Venkat Malladi authored 6 years ago
  
  200ded13
- Update number of peaks. · 7f082ef8
  Venkat Malladi authored 6 years ago
  
  7f082ef8
- Remove head. · b4a65689
  Venkat Malladi authored 6 years ago
  
  b4a65689
Jan 07, 2019
- Fix paired-end tests. · 3631108c
  Venkat Malladi authored 6 years ago
  
  3631108c
- Fix what tests are run and the testing output. · 6fddf146
  Venkat Malladi authored 6 years ago
  
  6fddf146
- Remove space. · 123c177c
  Venkat Malladi authored 6 years ago
  
  123c177c
Jan 06, 2019
- Update R script output. · 1f604a6a
  Venkat Malladi authored 6 years ago
  
  1f604a6a
- Fix names in motif search and adding summits files. · db7110cb
  Venkat Malladi authored 6 years ago
  
  db7110cb
- Add summits and remove extra names in files. · e1f7f61b
  Venkat Malladi authored 6 years ago
  
  e1f7f61b
- Shorten and update file names. · fbec8738
  Venkat Malladi authored 6 years ago
  
  fbec8738
- Shorten and update file names. · 7db1f905
  Venkat Malladi authored 6 years ago
  
  7db1f905
- Update cross correlation filenames to be shorter. · 487b307d
  Venkat Malladi authored 6 years ago
  
  487b307d
- Change sample names for convert reads. · f760c6df
  Venkat Malladi authored 6 years ago
  
  f760c6df
- Update file names and output for filter reads. · cf00e0e5
  Venkat Malladi authored 6 years ago
  
  cf00e0e5
- verify that output directory doesn't exist. · d6dd0596
  Venkat Malladi authored 6 years ago
  
  d6dd0596
- Fix test options and files that should be moved over. · 3a0ac094
  Venkat Malladi authored 6 years ago
  
  3a0ac094
- fix missing genome params and annotate peaks syntax. · cde5c10a
  Venkat Malladi authored 6 years ago
  
  cde5c10a
- Update mapped reads with sample id. · 4c3add75
  Venkat Malladi authored 6 years ago
  
  4c3add75
- Add test for sample and experiment id conformance. · b1c3fb87
  Venkat Malladi authored 6 years ago
  
  b1c3fb87
- Change fastq's to be new sample names as defined by the sample_id. · cec86acd
  Venkat Malladi authored 6 years ago
  
  cec86acd
- Update outdir default. · 22db60b0
  Venkat Malladi authored 6 years ago
  
  22db60b0
- Remove test code. · ac16a48e
  Venkat Malladi authored 6 years ago
  
  ac16a48e
- Change output of diffPeaks design file. · 83e1537d
  Venkat Malladi authored 6 years ago
  
  83e1537d
Jan 05, 2019
- Add option for outdir. · 6cbc074d
  Venkat Malladi authored 6 years ago
  
  6cbc074d
- Test for new unique experiment determination. · 4a27bcf5
  Venkat Malladi authored 6 years ago
  
  4a27bcf5
- Add in test to see if output exists. · fb1633a3
  Venkat Malladi authored 6 years ago
  
  fb1633a3
- Change to int for fragment length. · 06b65b68
  Venkat Malladi authored 6 years ago
  
  06b65b68
- Change order of process. Made diffPeaks a when opperative. · 92096435
  Venkat Malladi authored 6 years ago
  
  92096435