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chipseq_analysis
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d6dd0596
Commit
d6dd0596
authored
6 years ago
by
Venkat Malladi
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verify that output directory doesn't exist.
parent
3a0ac094
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workflow/tests/test_diff_peaks.py
+2
-11
2 additions, 11 deletions
workflow/tests/test_diff_peaks.py
with
2 additions
and
11 deletions
workflow/tests/test_diff_peaks.py
+
2
−
11
View file @
d6dd0596
...
...
@@ -12,20 +12,11 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@pytest.mark.singleend
def
test_diff_peaks_singleend_single_rep
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_diffbind.bed
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_diffbind.csv
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_heatmap.pdf
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_pca.pdf
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
normcount_peaksets.pdf
'
))
assert
os
.
path
.
isdir
(
test_output_path
)
==
False
@pytest.mark.pairedend
def
test_annotate_peaks_pairedend_single_rep
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_diffbind.bed
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_diffbind.csv
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_heatmap.pdf
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
no_pca.pdf
'
))
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
normcount_peaksets.pdf
'
))
assert
os
.
path
.
isdir
(
test_output_path
)
==
False
@pytest.mark.singlediff
def
test_diff_peaks_singleend_multiple_rep
():
...
...
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