Commits · 96069f62a6902e0d25d5cfbe90666309192c727a · Astrocyte / Workflows / BICF / chipseq_analysis

Jan 09, 2019
- Update configuration. · 96069f62
  Venkat Malladi authored 6 years ago
  
  96069f62
- Fix annotate length. · b1dbf288
  Venkat Malladi authored 6 years ago
  
  b1dbf288
- Fix number of peaks. · 785478ce
  Venkat Malladi authored 6 years ago
  
  785478ce
Jan 08, 2019
- Fixed test data and test output. · 200ded13
  Venkat Malladi authored 6 years ago
  
  200ded13
- Update number of peaks. · 7f082ef8
  Venkat Malladi authored 6 years ago
  
  7f082ef8
Jan 07, 2019
- Fix paired-end tests. · 3631108c
  Venkat Malladi authored 6 years ago
  
  3631108c
- Fix what tests are run and the testing output. · 6fddf146
  Venkat Malladi authored 6 years ago
  
  6fddf146
Jan 06, 2019
- verify that output directory doesn't exist. · d6dd0596
  Venkat Malladi authored 6 years ago
  
  d6dd0596
- Fix test options and files that should be moved over. · 3a0ac094
  Venkat Malladi authored 6 years ago
  
  3a0ac094
- fix missing genome params and annotate peaks syntax. · cde5c10a
  Venkat Malladi authored 6 years ago
  
  cde5c10a
- Update outdir default. · 22db60b0
  Venkat Malladi authored 6 years ago
  
  22db60b0
- Remove test code. · ac16a48e
  Venkat Malladi authored 6 years ago
  
  ac16a48e
- Change output of diffPeaks design file. · 83e1537d
  Venkat Malladi authored 6 years ago
  
  83e1537d
Jan 05, 2019
- Add option for outdir. · 6cbc074d
  Venkat Malladi authored 6 years ago
  
  6cbc074d
- Test for new unique experiment determination. · 4a27bcf5
  Venkat Malladi authored 6 years ago
  
  4a27bcf5
- Add in test to see if output exists. · fb1633a3
  Venkat Malladi authored 6 years ago
  
  fb1633a3
- Change to int for fragment length. · 06b65b68
  Venkat Malladi authored 6 years ago
  
  06b65b68
- Change order of process. Made diffPeaks a when opperative. · 92096435
  Venkat Malladi authored 6 years ago
  
  92096435
- Change test lenght of output. · 6b3c190b
  Venkat Malladi authored 6 years ago
  
  6b3c190b
- Add in extension to other functions. · 9d874ea1
  Venkat Malladi authored 6 years ago
  
  9d874ea1
Jan 04, 2019
- Defaulted to zcat instead of unzip file. · de67f536
  Venkat Malladi authored 6 years ago
```
(cherry picked from commit ec737360)
```
  de67f536
- Fix paried-end quality output options. · 74e367c1
  Venkat Malladi authored 6 years ago
  
  74e367c1
- Fix paried-end quality output. · aa505047
  Venkat Malladi authored 6 years ago
  
  aa505047
- remove annotate peak vennpie and update test. · afa3bbee
  Venkat Malladi authored 6 years ago
  
  afa3bbee
- Fix memechip output directoires. · 673c0718
  Venkat Malladi authored 6 years ago
  
  673c0718
Dec 27, 2018
- Add test for motif search output. · 1a61363d
  Venkat Malladi authored 6 years ago
  
  1a61363d
- Check differential peaks. · d84a3b62
  Venkat Malladi authored 6 years ago
  
  d84a3b62
- Remove testing design string. · eea9ab16
  Venkat Malladi authored 6 years ago
  
  eea9ab16
- Fix tests so they run on single end and paired end. · c508559b
  Venkat Malladi authored 6 years ago
  
  c508559b
- Fix motif search and limit number of peaks. · 813fb41d
  Venkat Malladi authored 6 years ago
  
  813fb41d
Dec 26, 2018
- Remove output and rename touched files. · 6de1721c
  Venkat Malladi authored 6 years ago
  
  6de1721c
- Update script name, R version and end result. · 6f6aa9d5
  Venkat Malladi authored 6 years ago
  
  6f6aa9d5
- Fix program description. · 954ecd5f
  Venkat Malladi authored 6 years ago
  
  954ecd5f
- Change R version and output. · e7b72cfb
  Venkat Malladi authored 6 years ago
  
  e7b72cfb
Dec 25, 2018
- Fix our file name · 0f2a8f86
  Venkat Malladi authored 6 years ago
  
  0f2a8f86
- Termite annodb · 931b9086
  Venkat Malladi authored 6 years ago
  
  931b9086
Dec 24, 2018
- Add missing libraries · 16b629be
  Venkat Malladi authored 6 years ago
  
  16b629be
- Remove extra parathesis · c6374f18
  Venkat Malladi authored 6 years ago
  
  c6374f18
- Test annotate peaks. · ea9dc8e6
  Venkat Malladi authored 6 years ago
  
  ea9dc8e6
- Add in paired end test data. · 7bddefc4
  Venkat Malladi authored 6 years ago
  
  7bddefc4