Commits · 84872f975ecf01f81525312257ae05adfba2edd9 · Astrocyte / Workflows / BICF / chipseq_analysis

Oct 01, 2017
- Add triming of reads, remove fastqc step. · 84872f97
  Venkat Malladi authored 7 years ago
  
  84872f97
Sep 30, 2017
- Merge branch '1-fastqc' into 'master' · c9f0a2c4
  Venkat Malladi authored 7 years ago
```
Resolve "Add in Fastqc"

Closes #1

See merge request !4
```
  c9f0a2c4
- Merge branch 'master' into '1-fastqc' · cb70f489
  Venkat Malladi authored 7 years ago
```
# Conflicts:
#   .gitlab-ci.yml
```
  cb70f489
- Add in fastqc step. · 3d73714a
  Venkat Malladi authored 7 years ago
  
  3d73714a
Sep 28, 2017
- Pass nextflow test for design file. · 8ef6e674
  Venkat Malladi authored 7 years ago
  
  8ef6e674
Sep 27, 2017
- Remove directory change. · ee536623
  Venkat Malladi authored 7 years ago
  
  ee536623
- Add information for local library. · eb8f7642
  Venkat Malladi authored 7 years ago
  
  eb8f7642
- Add in pytest-pythonpath. · 46d64cf6
  Venkat Malladi authored 7 years ago
  
  46d64cf6
- Add in dummy gitlab file. · 2728fc7e
  Venkat Malladi authored 7 years ago
  
  2728fc7e
Sep 26, 2017
- Update gitlab ci for pytest. · b3322653
  Venkat Malladi authored 7 years ago
  
  b3322653
- Add in test for design files. · 02bef1b4
  Venkat Malladi authored 7 years ago
  
  02bef1b4
Sep 20, 2017
- update syntax and order of qc_fastq.py · dfed27c2
  Venkat Malladi authored 7 years ago
  
  dfed27c2
Sep 13, 2017
- Add gitlab-ci test configuration and update testing. · 5f7f3d0f
  Venkat Malladi authored 7 years ago
  
  5f7f3d0f
- Add in test data and updated scripts. · db1c9133
  Venkat Malladi authored 7 years ago
  
  db1c9133
Sep 12, 2017
- Update name of task and permission. · 73082a3c
  Venkat Malladi authored 7 years ago
  
  73082a3c
- Update modules. · b5d2122c
  Venkat Malladi authored 7 years ago
  
  b5d2122c
- First test at using fastqc. · ad1a4aa5
  Venkat Malladi authored 7 years ago
  
  ad1a4aa5
Sep 08, 2017
- Remove extra file. · c81ad56c
  Venkat Malladi authored 7 years ago
  
  c81ad56c
- Add in gitignore and remove pyc files · 458ac1f7
  Venkat Malladi authored 7 years ago
  
  458ac1f7
May 09, 2017
- Merge branch 'master' of https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis · 9d2ef57e
  Beibei Chen authored 7 years ago
  
  9d2ef57e
- fix chipseeker mm10 · e93f03f2
  Beibei Chen authored 7 years ago
  
  e93f03f2
Apr 26, 2017
- Update index.md · df5504bf
  Beibei Chen authored 7 years ago
  
  publish_0.0.12
  
  df5504bf
- Update index.md · cd932af1
  Beibei Chen authored 7 years ago
  
  cd932af1
- add example · 0f73daf5
  Beibei Chen authored 7 years ago
  
  0f73daf5
- change name · 4f45e9b1
  Beibei Chen authored 7 years ago
  
  4f45e9b1
- Add example design file · 1f03100f
  Beibei Chen authored 7 years ago
  
  1f03100f
- update yaml · 480f260b
  Beibei Chen authored 7 years ago
  
  480f260b
- remove unessessory files · 3cc1bd73
  Beibei Chen authored 7 years ago
  
  3cc1bd73
- update yaml · 37906e07
  Beibei Chen authored 7 years ago
  
  37906e07
- modify runMEME and set default for toppeak · 144bd3f4
  Beibei Chen authored 7 years ago
  
  publish_0.0.11
  
  144bd3f4
- Still need pybedtools · b585c2ff
  Beibei Chen authored 7 years ago
  
  b585c2ff
Apr 25, 2017
- Add regex · 7dc50dc1
  Beibei Chen authored 7 years ago
  
  publish_0.0.10
  
  7dc50dc1
- remove pybedtools module · 1c18232a
  Beibei Chen authored 7 years ago
  
  publish_0.0.9
  
  1c18232a
- Create new tat · 863e467d
  Beibei Chen authored 7 years ago
  
  publish_0.0.8
  
  863e467d
- Add deeptools for twobitreader package · d5e69757
  Beibei Chen authored 7 years ago
  
  publish_0.0.7
  
  d5e69757
- blctst · 395f4c61
  Beibei Chen authored 7 years ago
  
  2 tags
  
  395f4c61
Apr 24, 2017
- Update index.md · 74816a98
  Beibei Chen authored 7 years ago
  
  publish_0.0.4
  
  74816a98
Apr 21, 2017
- Update the yml file · f6af50dc
  Beibei Chen authored 7 years ago
  
  f6af50dc
- fix path and bam indexing · d100d917
  Beibei Chen authored 7 years ago
  
  d100d917
- Merge branch 'develop' · b77bf445
  Beibei Chen authored 7 years ago
  
  b77bf445