Merge branch '1-fastqc' into 'master' (c9f0a2c4) · Commits · Astrocyte / Workflows / BICF / chipseq_analysis · GitLab

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c9f0a2c4

Commit c9f0a2c4 authored 7 years ago by

Venkat Malladi

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Merge branch '1-fastqc' into 'master'

Resolve "Add in Fastqc"

Closes #1

See merge request !4

parents 2728fc7e cb70f489

No related merge requests found

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.gitignore 99 additions, 0 deletions

.gitignore
.gitlab-ci.yml 5 additions, 1 deletion

.gitlab-ci.yml
astrocyte_pkg.yml 19 additions, 38 deletions

astrocyte_pkg.yml
index.md 0 additions, 1 deletion

index.md
pytest.ini 2 additions, 0 deletions

pytest.ini
test_data/design_ENCSR238SGC_SE.txt 5 additions, 0 deletions

test_data/design_ENCSR238SGC_SE.txt
test_data/design_ENCSR729LGA_PE.txt 5 additions, 0 deletions

test_data/design_ENCSR729LGA_PE.txt
test_data/fetch_test_data.sh 17 additions, 0 deletions

test_data/fetch_test_data.sh
workflow/main.nf 69 additions, 128 deletions

workflow/main.nf
workflow/scripts/__init__.py 0 additions, 1 deletion

workflow/scripts/__init__.py
workflow/scripts/check_design.py 134 additions, 0 deletions

workflow/scripts/check_design.py
workflow/scripts/qc_fastq.py 79 additions, 0 deletions

workflow/scripts/qc_fastq.py
workflow/scripts/runDeepTools.pyc 0 additions, 0 deletions

workflow/scripts/runDeepTools.pyc
workflow/scripts/runMemechip.pyc 0 additions, 0 deletions

workflow/scripts/runMemechip.pyc
workflow/tests/test_check_design.py 103 additions, 0 deletions

workflow/tests/test_check_design.py

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