Commits · 3b05c7c226a84bdecf20de8b7f0f579236485cd8 · Astrocyte / Workflows / BICF / chipseq_analysis

Oct 27, 2017
- Make process not local. · 3b05c7c2
  Venkat Malladi authored 7 years ago
  
  3b05c7c2
- Fix syntax. · 6f938782
  Venkat Malladi authored 7 years ago
  
  6f938782
- Add in pooling and psuedoreplicate scripts and tests. · 32e90024
  Venkat Malladi authored 7 years ago
  
  32e90024
Oct 26, 2017
- Refactor code to have consistent use of arguments and referenceing pandas. · 249284b7
  Venkat Malladi authored 7 years ago
  
  249284b7
Oct 25, 2017
- Fix syntax of get_args across all scripts. · 648dc44d
  Venkat Malladi authored 7 years ago
  
  648dc44d
- Add in os library. · 93ddd8a2
  Venkat Malladi authored 7 years ago
  
  93ddd8a2
- Fix typ in file. · 87996cff
  Venkat Malladi authored 7 years ago
  
  87996cff
- Add in making experiment design files. · 3d6faead
  Venkat Malladi authored 7 years ago
  
  3d6faead
Oct 24, 2017
- Fix test fil.e · 48fa7dbb
  Venkat Malladi authored 7 years ago
  
  48fa7dbb
- Update test with correct comparison syntax. · 9c6f11a1
  Venkat Malladi authored 7 years ago
  
  9c6f11a1
- Fix output. · 79526d57
  Venkat Malladi authored 7 years ago
  
  79526d57
- Fix options. · f545947d
  Venkat Malladi authored 7 years ago
  
  f545947d
- Fix reference to file. · 6bc954e9
  Venkat Malladi authored 7 years ago
  
  6bc954e9
Oct 23, 2017
- Fix typo in outputs. · 6ae71bba
  Venkat Malladi authored 7 years ago
  
  6ae71bba
- Add in xcor step and qc values. · b5d90522
  Venkat Malladi authored 7 years ago
  
  b5d90522
- fix typo in file name during test. · 853c4d18
  Venkat Malladi authored 7 years ago
  
  853c4d18
- Fix output file name. · ea889a62
  Venkat Malladi authored 7 years ago
  
  ea889a62
- Fix output copu. · 5435d541
  Venkat Malladi authored 7 years ago
  
  5435d541
- Update help. · a769626f
  Venkat Malladi authored 7 years ago
  
  a769626f
- Add in tmp directory. · 50a51530
  Venkat Malladi authored 7 years ago
  
  50a51530
Oct 22, 2017
- update config to not have local step. · b801983f
  Venkat Malladi authored 7 years ago
  
  b801983f
- Fix passing of bedpe reads. · 17fd164c
  Venkat Malladi authored 7 years ago
  
  17fd164c
- update output of convertReads. · 938c75fd
  Venkat Malladi authored 7 years ago
  
  938c75fd
- Convert bam to tagAlign. · 4c00f7ea
  Venkat Malladi authored 7 years ago
  
  4c00f7ea
Oct 20, 2017
- Fix syntax of process name. · bdf276ec
  Venkat Malladi authored 7 years ago
  
  bdf276ec
Oct 18, 2017
- Remove fastqc step. · 7a3a2bb0
  Venkat Malladi authored 7 years ago
  
  7a3a2bb0
- Fix path to files. · b8c85d1e
  Venkat Malladi authored 7 years ago
  
  b8c85d1e
- Fix varaible name. · c64e9f39
  Venkat Malladi authored 7 years ago
  
  c64e9f39
- Fix missing variable. · 60ff5559
  Venkat Malladi authored 7 years ago
  
  60ff5559
- Fix output dedupdesign. · 2eddbd49
  Venkat Malladi authored 7 years ago
  
  2eddbd49
- Fix params. · 5b792c55
  Venkat Malladi authored 7 years ago
  
  5b792c55
Oct 17, 2017
- Fix outdir syntax. · 88f2aae1
  Venkat Malladi authored 7 years ago
  
  88f2aae1
- Fix seed. · 254336c3
  Venkat Malladi authored 7 years ago
  
  254336c3
- Add in deeptools code to generate QC from deeptools. · 4e68354e
  Venkat Malladi authored 7 years ago
  
  4e68354e
- Update name of params. · 471773a6
  Venkat Malladi authored 7 years ago
  
  471773a6
- Update tests to reflect change in design file. · a1fdbeab
  Venkat Malladi authored 7 years ago
  
  a1fdbeab
Oct 11, 2017
- Add in experiment_id and check to see if unique replicate ids are given. · 2bb7f6ed
  Venkat Malladi authored 7 years ago
  
  2bb7f6ed
- Fix test. · f4b48e0b
  Venkat Malladi authored 7 years ago
  
  f4b48e0b
Oct 10, 2017
- Add in tests for single end sequencing. · eeb76613
  Venkat Malladi authored 7 years ago
  
  eeb76613
- Update files used. · b8588c1a
  Venkat Malladi authored 7 years ago
  
  b8588c1a