Commits · 035156b7711e0a226101557901bb28f85c03fee5 · Astrocyte / Workflows / BICF / chipseq_analysis

Aug 14, 2018
- Change to new conventions. · 035156b7
  Venkat Malladi authored 6 years ago
  
  035156b7
Jul 26, 2018
- updated all processes to use samtools/1.6 · 98315769
  Jonathan Gesell authored 6 years ago
  
  98315769
Jul 25, 2018
- add in motif search. · 5198436d
  Venkat Malladi authored 6 years ago
  
  5198436d
Jul 24, 2018
- Add in differntial binding peaks. · 7b67dda5
  Venkat Malladi authored 6 years ago
  
  7b67dda5
- Update annotation script. · 7deea97e
  Venkat Malladi authored 6 years ago
  
  7deea97e
Jun 29, 2018
- Update biohpc.config to deal with queue · a52d2a8c
  Venkat Malladi authored 6 years ago
  
  publish_0.0.13
  
  a52d2a8c
Jun 25, 2018
- Expire in 2 days. · 3a5fbf2c
  Venkat Malladi authored 6 years ago
  
  3a5fbf2c
Mar 16, 2018
- Update config to use executor instead of cpu in config file. · 55c0d935
  Venkat Malladi authored 7 years ago
  
  55c0d935
Mar 15, 2018
- Fix error in config not quoted varaible · 912cae35
  Venkat Malladi authored 7 years ago
  
  912cae35
- Remove config · 707b9e36
  Venkat Malladi authored 7 years ago
  
  707b9e36
- Fix config. · 928b56da
  Venkat Malladi authored 7 years ago
  
  928b56da
- Update nextflow version and reports. · a32a7b3a
  Venkat Malladi authored 7 years ago
  
  a32a7b3a
Nov 29, 2017
- Fix order of loading phantompeakqualtools. · 07d73df9
  Venkat Malladi authored 7 years ago
  
  07d73df9
Nov 16, 2017
- Fix config file. · 088309a4
  Venkat Malladi authored 7 years ago
  
  088309a4
- Add in naive overlap peaks. · a2609dc8
  Venkat Malladi authored 7 years ago
  
  a2609dc8
Nov 15, 2017
- Fix syntax. · 45277ef8
  Venkat Malladi authored 7 years ago
  
  45277ef8
- Change to local executor. · 0d5907c2
  Venkat Malladi authored 7 years ago
  
  0d5907c2
Nov 14, 2017
- Add in call peaks step and configurations. · 96e6d832
  Venkat Malladi authored 7 years ago
  
  96e6d832
Oct 27, 2017
- Make process not local. · 3b05c7c2
  Venkat Malladi authored 7 years ago
  
  3b05c7c2
- Add in pooling and psuedoreplicate scripts and tests. · 32e90024
  Venkat Malladi authored 7 years ago
  
  32e90024
Oct 25, 2017
- Add in making experiment design files. · 3d6faead
  Venkat Malladi authored 7 years ago
  
  3d6faead
Oct 23, 2017
- Add in xcor step and qc values. · b5d90522
  Venkat Malladi authored 7 years ago
  
  b5d90522
Oct 22, 2017
- update config to not have local step. · b801983f
  Venkat Malladi authored 7 years ago
  
  b801983f
- Convert bam to tagAlign. · 4c00f7ea
  Venkat Malladi authored 7 years ago
  
  4c00f7ea
Oct 20, 2017
- Fix syntax of process name. · bdf276ec
  Venkat Malladi authored 7 years ago
  
  bdf276ec
Oct 17, 2017
- Add in deeptools code to generate QC from deeptools. · 4e68354e
  Venkat Malladi authored 7 years ago
  
  4e68354e
Oct 10, 2017
- Update samtools version and synxtax to fix bugs in last push. · 2948ddca
  Venkat Malladi authored 7 years ago
  
  2948ddca
Oct 09, 2017
- Add in steps to remove dups and filter reads. · 3a9a868b
  Venkat Malladi authored 7 years ago
  
  3a9a868b
Oct 08, 2017
- Remove memory constraints. · 577d7b85
  Venkat Malladi authored 7 years ago
  
  577d7b85
Oct 07, 2017
- Update bwa version to match index. · d14969c6
  Venkat Malladi authored 7 years ago
  
  d14969c6
Oct 06, 2017
- Use python3 for testing the design file and use local for this. · 970fea4b
  Venkat Malladi authored 7 years ago
  
  970fea4b
- Add in trace config and fix varaible of map_reads. · 0205044c
  Venkat Malladi authored 7 years ago
  
  0205044c
Oct 05, 2017
- Rename config file. · 758cf363
  Venkat Malladi authored 7 years ago
  
  758cf363
- Add in maping step with apporpriate configurations. · 14299993
  Venkat Malladi authored 7 years ago
  
  14299993
Oct 04, 2017
- Add in nextflow config for loading modules. · 38f026a1
  Venkat Malladi authored 7 years ago
  
  38f026a1