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Commit 5f6dd111 authored by Venkat Malladi's avatar Venkat Malladi
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Fix diff peaks output for single end.

parent 6f79eba4
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workflow/tests/test_diff_peaks.py
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...@@ -42,7 +42,7 @@ def test_diffbind_singleend_multiple_rep(): ...@@ -42,7 +42,7 @@ def test_diffbind_singleend_multiple_rep():
assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC_vs_ENCSR272GNQ_diffbind.bed')) assert os.path.exists(os.path.join(test_output_path, 'ENCSR238SGC_vs_ENCSR272GNQ_diffbind.bed'))
diffbind_file = test_output_path + 'ENCSR238SGC_vs_ENCSR272GNQ_diffbind.csv' diffbind_file = test_output_path + 'ENCSR238SGC_vs_ENCSR272GNQ_diffbind.csv'
assert os.path.exists(diffbind_file) assert os.path.exists(diffbind_file)
assert utils.count_lines(diffbind_file) == 201039 assert utils.count_lines(diffbind_file) == 197471
@pytest.mark.paireddiff @pytest.mark.paireddiff
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