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Commit 3b0aeaf6 authored by Venkat Malladi's avatar Venkat Malladi
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Clear java core dumps.

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.gitlab-ci.yml
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...@@ -2,6 +2,7 @@ before_script: ...@@ -2,6 +2,7 @@ before_script:
- module add python/3.6.1-2-anaconda - module add python/3.6.1-2-anaconda
- pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1 - pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1
- module load nextflow/0.31.0 - module load nextflow/0.31.0
- ulimit -Ss unlimited
- ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/ - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/
stages: stages:
...@@ -51,7 +52,7 @@ single_end_single_control: ...@@ -51,7 +52,7 @@ single_end_single_control:
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false
- pytest -m singlecontrol - pytest -m singlecontrol
single_end_diff: single_end_diff:
stage: multiple stage: multiple
only: only:
......
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