diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 9fb33bb7588b43f7a8c474ae8236d4397ccb3481..fed6c3c946733a2d773773de40a670bfdaea9123 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -2,6 +2,7 @@ before_script: - module add python/3.6.1-2-anaconda - pip install --user pytest-pythonpath==0.7.1 pytest-cov==2.5.1 - module load nextflow/0.31.0 + - ulimit -Ss unlimited - ln -s /project/shared/bicf_workflow_ref/workflow_testdata/chipseq/*fastq.gz test_data/ stages: @@ -51,7 +52,7 @@ single_end_single_control: script: - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_single_contol_SE.txt" --genome 'GRCh38' --pairedEnd false --astrocyte false - pytest -m singlecontrol - + single_end_diff: stage: multiple only: