Update container codes to work with new repo and vizapp I/O

shiny/build_and_push_vizapp_container.sh

@@ -4,7 +4,7 @@
 
 DOCKER_PASSWORD="pD7XKp65JG7DXPbLcZYj"
 DOCKER_USERNAME="registry_push"
-CONTAINER_NAME="git.biohpc.swmed.edu:5050/biohpc/astrocyte/astroshiny:0.2.0"
+CONTAINER_NAME="git.biohpc.swmed.edu:5050/biohpc/astrocyte-container-images/astroshiny:0.5.0"
 
 
 #Build the dockerfile with the astrocyte_example_wordcount folder as the target.

shiny/runContainer.sh

@@ -8,14 +8,11 @@ HOST_PORT=8123
 CONTAINER_NAME="astroshiny:test"
 HOST_WORKFLOW_OUTPUT="/vagrant/examples/astrocyte_example_wordcount/workflow/output"
 CONTAINER_INPUT_FOLDER="/mnt/workflow_output"
-CONTAINER_OUTPUT_FOLDER="/mnt/vizapp_output"
-HOST_VIZAPP_OUTPUT="/vagrant/examples/astrocyte_example_wordcount/workflow/vizappOut"
 
 
 docker container run \
 	--publish ${HOST_PORT}:${CONTAINER_PORT} \
 	--mount type=bind,source="${HOST_WORKFLOW_OUTPUT}",target="${CONTAINER_INPUT_FOLDER}" \
-	--mount type=bind,source="${HOST_VIZAPP_OUTPUT}",target="${CONTAINER_OUTPUT_FOLDER}" \
 	--env outputDir=${CONTAINER_INPUT_FOLDER} \
 	${CONTAINER_NAME} 
 

shiny/runSingularity.sh

@@ -8,8 +8,6 @@ HOST_PORT=8123
 CONTAINER_NAME="astroshiny.simg"
 HOST_WORKFLOW_OUTPUT="/vagrant/examples/astrocyte_example_wordcount/workflow/output"
 CONTAINER_INPUT_FOLDER="/mnt/workflow_output"
-CONTAINER_OUTPUT_FOLDER="/mnt/vizapp_output"
-HOST_VIZAPP_OUTPUT="/vagrant/examples/astrocyte_example_wordcount/workflow/vizappOut"
 
 export outputDir=${CONTAINER_INPUT_FOLDER}
 
@@ -22,6 +20,5 @@ export outputDir=${CONTAINER_INPUT_FOLDER}
 
 singularity exec \
 	--bind "${HOST_WORKFLOW_OUTPUT}":"${CONTAINER_INPUT_FOLDER}" \
-	--bind "${HOST_VIZAPP_OUTPUT}":"${CONTAINER_OUTPUT_FOLDER}" \
 	${CONTAINER_NAME} \
 	R -e "shiny::runApp('/app', host = '0.0.0.0', port = 8123)"