Add R/3.4.4

R/3.4.4/Dockerfile

+FROM centos:centos7
+
+LABEL CONTAINER_VERSION="0.0.1" \
+    AUTHOR="Peng Lian" \
+    EMAIL="biohpc-help@utsouthwestern.edu"
+
+# build-time varialbes
+ARG http_proxy=http://proxy.swmed.edu:3128/ 
+ARG https_proxy=http://proxy.swmed.edu:3128/ 
+ARG no_proxy="*.swmed.edu,*.swmed.org,*.utsouthwestern.edu,localhost,127.0.0.1/8"
+
+ENV http_proxy="${http_proxy}" \
+    https_proxy="${https_proxy}" \
+    no_proxy="${no_proxy}"
+
+# Enable EPEL and install dependencies for building R packages
+RUN mkdir /home2 /work /project /archive && \
+    yum -y update && \
+    yum install -y epel-release && \
+    yum groupinstall -y "Development Tools" && \
+    yum install -y \
+        openssl \
+        openssl-devel \
+        libcurl \
+        libcurl-devel \
+        libpng-devel \
+        libxml2 \
+        libxml2-devel \
+        nlopt nlopt-devel \
+        boost \
+        boost-devel \
+        boost-system \
+        boost-filesystem \
+        boost-thread \
+        cairo-devel \
+        tcl-devel \
+        tk-devel \
+        wget \
+        python-devel \
+        gsl-devel \
+        udunits2-devel \
+        libpng-devel \
+        cairo-devel \
+        libtiff-devel \
+        fftw-devel \
+        freetype-devel \
+        cmake \
+        librsvg2-devel \
+        mariadb-devel \
+        pandoc \
+        pandoc-citeproc \
+        udunits-devel \
+        v8-314-devel \
+        zlib-devel \
+        texlive-latex
+
+# Configure default locale
+ENV LC_ALL=en_US.UTF-8 \
+    LANG=en_US.UTF-8 \
+    R_VERSION=3.4.4
+
+# Install R and packages
+RUN yum -y install https://cdn.rstudio.com/r/centos-7/pkgs/R-${R_VERSION}-1-1.x86_64.rpm && \
+    yum clean all && \
+    ln -s /opt/R/${R_VERSION}/bin/R /usr/local/bin/R && \
+    ln -s /opt/R/${R_VERSION}/bin/Rscript /usr/local/bin/Rscript && \
+    /usr/local/bin/R -e "install.packages(c('BiocManager'), repos='https://cloud.r-project.org')" && \
+    R --version
+
+# set default CRAN mirror
+COPY Rprofile.site /opt/R/${R_VERSION}/lib/R/etc/
+
+# Default command
+CMD ["R"]

R/3.4.4/Rprofile.site

+options(repos = c(CRAN = 'https://cloud.r-project.org'), download.file.method = 'libcurl')
+options(repos = c(CRAN = 'https://cran.rstudio.com/'), download.file.method = 'libcurl')
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