Commits · e62a7dde0a45119200a4666aadae17e56d54b4b9 · Strand Lab / sc-TissueMapper_Pr · GitLab

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Dec 07, 2018
- Get PdPbPc Lymphoid/Myeloid analyis stable... need to get better genelists · e62a7dde
  Gervaise Henry authored 6 years ago
  
  e62a7dde
- Modify QuSAGE function to not create cor plots and to handle multiple sets with the same name · 9f182d6a
  Gervaise Henry authored 6 years ago
  
  9f182d6a
Nov 25, 2018
- Update · 2a9c758b
  Gervaise Henry authored 6 years ago
  
  2a9c758b
Nov 12, 2018
- Updata PdPbPc code... res etc · 024876a0
  Gervaise Henry authored 6 years ago
  
  024876a0
- Merge remote-tracking branch 'origin/develop' into PdPbPc · 3eb43246
  Gervaise Henry authored 6 years ago
  
  3eb43246
Nov 10, 2018
- Revert all analysis to use dws bulk pan Epi and St genelists for lin ID with QuSAGE · ca6ba2ef
  Gervaise Henry authored 6 years ago
  
  ca6ba2ef
Nov 06, 2018
- Decrease stringency for pan Epi/St generation in Pd and increase min pop downsample for FACS · 0f6497ca
  Gervaise Henry authored 6 years ago
  
  0f6497ca
Nov 05, 2018
- Update dws.sc pan Epi and St DEGs · 748625ec
  Gervaise Henry authored 6 years ago
  
  748625ec
- Filter pop specific genes from pan Epi and St DEGs · fc1e27a3
  Gervaise Henry authored 6 years ago
  
  fc1e27a3
Nov 04, 2018
- Don't downsample FACS analysis · e42b9eea
  Gervaise Henry authored 6 years ago
  
  e42b9eea
- Revert Epi and St dws.sc genesets and how they are generated · 988b20ad
  Gervaise Henry authored 6 years ago
  
  988b20ad
Nov 03, 2018
- Update dws.sc genes · dd3d77bc
  Gervaise Henry authored 6 years ago
  
  dd3d77bc
- Merge branch 'StressCompare' into 'develop' · ead1c737
  Gervaise Henry authored 6 years ago
```
Stress compare

See merge request !5
```
  ead1c737
- Fix output folders for StressCompare and add to Pd.sh · 696ac6fb
  Gervaise Henry authored 6 years ago
  
  696ac6fb
- Merge devleop into StressCompare · 68efa3e4
  Gervaise Henry authored 6 years ago
  
  68efa3e4
- Increase stringency for pan Epi and St DEG calc to 75% of pops and 2FC · c0718701
  Gervaise Henry authored 6 years ago
  
  c0718701
- Update README.md · c3a845d3
  Gervaise Henry authored 6 years ago
  
  c3a845d3
- Update readme.md · 1bd6628c
  Gervaise Henry authored 6 years ago
  
  1bd6628c
Nov 02, 2018
- Make DEG try · 31988046
  Gervaise Henry authored 6 years ago
  
  31988046
- Fix DEG on DS.D17 · e1789e83
  Gervaise Henry authored 6 years ago
  
  e1789e83
- Don't do cell cycle analysis for DS.D17 · ef38fbfd
  Gervaise Henry authored 6 years ago
  
  ef38fbfd
- Revert to high RAM nodes and new R/3.4.1 · 6dad81ef
  Gervaise Henry authored 6 years ago
  
  6dad81ef
- Revert to stable old R/3.4.1 · 71d62d0f
  Gervaise Henry authored 6 years ago
  
  71d62d0f
- Allow DS bash scripts to use any node · 4d30cda6
  Gervaise Henry authored 6 years ago
  
  4d30cda6
- Use rebuilt R/3.4.1 · ed753d6e
  Gervaise Henry authored 6 years ago
  
  ed753d6e
- Update bash scripts, link data and use new R/3.4.1 · 5cb8b844
  Gervaise Henry authored 6 years ago
  
  5cb8b844
- Fix LE DEG generation for Pd analysis · 5af3d377
  Gervaise Henry authored 6 years ago
  
  5af3d377
- Fix LE comparison for DEG for DS.D17 · 3861d456
  Gervaise Henry authored 6 years ago
  
  3861d456
- Add DEG generation to ds.D17 · 75c4e6ce
  Gervaise Henry authored 6 years ago
  
  75c4e6ce
Oct 26, 2018
- Fix Pd patient subsetting · cdda06ae
  Gervaise Henry authored 6 years ago
  
  cdda06ae
- Finalize (?) all code for PdPbPc to run · 84c4e944
  Gervaise Henry authored 6 years ago
  
  84c4e944
- Allow LinkData to create sub dir · 9c1da674
  Gervaise Henry authored 6 years ago
  
  9c1da674
- Add leu geneset, add 3grp cust col tSNE and finalize PdPbPc leu ID code · 948bf890
  Gervaise Henry authored 6 years ago
  
  948bf890
Oct 17, 2018
- Change post stress res to 1 and fix Pb subset · 0874bca6
  Gervaise Henry authored 6 years ago
  
  0874bca6
- Change post stress res to 1 and fix Pd subset · caf53b71
  Gervaise Henry authored 6 years ago
  
  caf53b71
- Change post stress res to 1 · f325d9c0
  Gervaise Henry authored 6 years ago
  
  f325d9c0
- Fix CustCol to handle Unknown better and fix PdPbPc.Pb code · 9d0c6557
  Gervaise Henry authored 6 years ago
  
  9d0c6557
- Fix CustCol to handle Unknown better and fix PdPbPc.Pd code · 252c1dc1
  Gervaise Henry authored 6 years ago
  
  252c1dc1
- Fix CustCol to handle Unknown better and fix PdPbPc.Pc code · 6e0fed3d
  Gervaise Henry authored 6 years ago
  
  6e0fed3d
- Add % var to PC plots · 1399756b
  Gervaise Henry authored 6 years ago
  
  1399756b