Commits · PrFx · Strand Lab / sc-TissueMapper_Pr

Dec 02, 2018
- Copy VAMC15x analysis to VAMC13x · 9969a1ea
  Gervaise Henry authored 6 years ago
  
  9969a1ea
- QuSAGE ALL populations at one time for VAMC15x · e0484b91
  Gervaise Henry authored 6 years ago
  
  e0484b91
Nov 10, 2018
- Merge remote-tracking branch 'origin/develop' into PrFx · 142e5028
  Gervaise Henry authored 6 years ago
  
  142e5028
- Revert all analysis to use dws bulk pan Epi and St genelists for lin ID with QuSAGE · ca6ba2ef
  Gervaise Henry authored 6 years ago
  
  ca6ba2ef
Nov 06, 2018
- Decrease stringency for pan Epi/St generation in Pd and increase min pop downsample for FACS · 0f6497ca
  Gervaise Henry authored 6 years ago
  
  0f6497ca
Nov 05, 2018
- Update dws.sc pan Epi and St DEGs · 748625ec
  Gervaise Henry authored 6 years ago
  
  748625ec
- Filter pop specific genes from pan Epi and St DEGs · fc1e27a3
  Gervaise Henry authored 6 years ago
  
  fc1e27a3
Nov 04, 2018
- Don't downsample FACS analysis · e42b9eea
  Gervaise Henry authored 6 years ago
  
  e42b9eea
- Revert Epi and St dws.sc genesets and how they are generated · 988b20ad
  Gervaise Henry authored 6 years ago
  
  988b20ad
Nov 03, 2018
- Update dws.sc genes · dd3d77bc
  Gervaise Henry authored 6 years ago
  
  dd3d77bc
- Merge branch 'StressCompare' into 'develop' · ead1c737
  Gervaise Henry authored 6 years ago
```
Stress compare

See merge request !5
```
  ead1c737
- Fix output folders for StressCompare and add to Pd.sh · 696ac6fb
  Gervaise Henry authored 6 years ago
  
  696ac6fb
- Merge devleop into StressCompare · 68efa3e4
  Gervaise Henry authored 6 years ago
  
  68efa3e4
- Increase stringency for pan Epi and St DEG calc to 75% of pops and 2FC · c0718701
  Gervaise Henry authored 6 years ago
  
  c0718701
- Update README.md · c3a845d3
  Gervaise Henry authored 6 years ago
  
  c3a845d3
- Update readme.md · 1bd6628c
  Gervaise Henry authored 6 years ago
  
  1bd6628c
Nov 02, 2018
- Make DEG try · 31988046
  Gervaise Henry authored 6 years ago
  
  31988046
- Fix DEG on DS.D17 · e1789e83
  Gervaise Henry authored 6 years ago
  
  e1789e83
- Don't do cell cycle analysis for DS.D17 · ef38fbfd
  Gervaise Henry authored 6 years ago
  
  ef38fbfd
- Revert to high RAM nodes and new R/3.4.1 · 6dad81ef
  Gervaise Henry authored 6 years ago
  
  6dad81ef
- Revert to stable old R/3.4.1 · 71d62d0f
  Gervaise Henry authored 6 years ago
  
  71d62d0f
- Allow DS bash scripts to use any node · 4d30cda6
  Gervaise Henry authored 6 years ago
  
  4d30cda6
- Use rebuilt R/3.4.1 · ed753d6e
  Gervaise Henry authored 6 years ago
  
  ed753d6e
- Update bash scripts, link data and use new R/3.4.1 · 5cb8b844
  Gervaise Henry authored 6 years ago
  
  5cb8b844
- Fix LE DEG generation for Pd analysis · 5af3d377
  Gervaise Henry authored 6 years ago
  
  5af3d377
- Fix LE comparison for DEG for DS.D17 · 3861d456
  Gervaise Henry authored 6 years ago
  
  3861d456
- Add DEG generation to ds.D17 · 75c4e6ce
  Gervaise Henry authored 6 years ago
  
  75c4e6ce
Oct 18, 2018
- Add code for VAMC015PrFx analysis · 9444c3d9
  Gervaise Henry authored 6 years ago
  
  9444c3d9
Oct 17, 2018
- Add % var to PC plots · 1399756b
  Gervaise Henry authored 6 years ago
  
  1399756b
- Finalize? stress comparisson (van den Brink) code · a684c35f
  Gervaise Henry authored 6 years ago
  
  a684c35f
Oct 16, 2018
- Merge remote-tracking branch 'origin/develop' into StressCompare · 52315a1a
  Gervaise Henry authored 6 years ago
  
  52315a1a
Oct 15, 2018
- Merge branch 'develop' into 'master' · 8713aaa9
  Gervaise Henry authored 6 years ago
```
Merge ds_D17 from develop into master

See merge request !4
```
  1.1.0
  
  8713aaa9
Oct 09, 2018
- Fix min st cluster size for QuSAGE · 68fdeb80
  Gervaise Henry authored 6 years ago
  
  68fdeb80
- Merge branch 'ds.D17' into 'develop' · dba99684
  Gervaise Henry authored 6 years ago
```
Merge completed D17 downsample in to develop

See merge request !3
```
  dba99684
- Remove depreciated code · 790d56ab
  Gervaise Henry authored 6 years ago
  
  790d56ab
Oct 08, 2018
- Add rdata save to D17 downsample aggr · 751d0a65
  Gervaise Henry authored 6 years ago
  
  751d0a65
- Add D17 downsample aggrggrigate code · b326f2a7
  Gervaise Henry authored 6 years ago
  
  b326f2a7
Oct 05, 2018
- Remove low gene filter for intitial load · 2a275403
  Gervaise Henry authored 6 years ago
  
  2a275403
- Remove low end cutoff for cell with low gene content · 51a83364
  Gervaise Henry authored 6 years ago
  
  51a83364
Oct 04, 2018
- Remove other merge with NE · ec340b65
  Gervaise Henry authored 6 years ago
  
  ec340b65