Commits · 9588554a17e7a90699eea7087903fc1041c6a631 · Strand Lab / sc-TissueMapper_Pr

Jul 13, 2018
- Separate bash.scripts for 2 and 3 patient aggreagations · 9588554a
  Gervaise Henry authored 6 years ago
  
  9588554a
- Fix DPrF analysis to use correct CCA code and make separate r.scripts for 2... · 8482bc0d
  Gervaise Henry authored 6 years ago
```
Fix DPrF analysis to use correct CCA code and make separate r.scripts for 2 and 3 patient aggregation
```
  8482bc0d
Jul 12, 2018
- Fix downsample for QuSAGE · bf696392
  Gervaise Henry authored 6 years ago
  
  bf696392
- Add multi-CCA, fix RunTSNE and FindClusters to use cca.aligned, add Seurat Rename function · 222475c0
  Gervaise Henry authored 6 years ago
  
  222475c0
Jul 10, 2018
- Filter opposing pan-lineage markers from unique DEGs · 318a9ff7
  Gervaise Henry authored 6 years ago
  
  318a9ff7
Jul 09, 2018
- Update README.md · 1074c0ef
  Gervaise Henry authored 6 years ago
  
  1074c0ef
- Update README.md · 1a96b516
  Gervaise Henry authored 6 years ago
  
  1a96b516
- Update README.md · 849a6f69
  Gervaise Henry authored 6 years ago
  
  849a6f69
- Update readme.md · 641f5c1f
  Gervaise Henry authored 6 years ago
  
  641f5c1f
- Save empty analysis folder in git · 7008fdcf
  Gervaise Henry authored 6 years ago
  
  7008fdcf
Jul 08, 2018
- Add secondary analysis to DPr bash script · fc999941
  Gervaise Henry authored 6 years ago
  
  fc999941
- Remove depreciated bash scripts · fad1aca5
  Gervaise Henry authored 6 years ago
  
  fad1aca5
- Remove depreciated genesets · afa97489
  Gervaise Henry authored 6 years ago
  
  afa97489
- Remove depreciated R files · 6d788cd4
  Gervaise Henry authored 6 years ago
  
  6d788cd4
- Add pseudotime code · 01ee610c
  Gervaise Henry authored 6 years ago
  
  01ee610c
- Cleanup functions · d827f4e8
  Gervaise Henry authored 6 years ago
  
  d827f4e8
Jun 26, 2018
- Load required packages at in DPr diy · 4f807a46
  Gervaise Henry authored 6 years ago
  
  4f807a46
- Add function load to DPr diy · 96acfb87
  Gervaise Henry authored 6 years ago
  
  96acfb87
- Add data loads to DPr diy · c428ce8f
  Gervaise Henry authored 6 years ago
  
  c428ce8f
Jun 25, 2018
- Update D17 Cust figs · 7a262896
  Gervaise Henry authored 6 years ago
  
  7a262896
- Update D17 Cust figs · 856055f9
  Gervaise Henry authored 6 years ago
  
  856055f9
Jun 24, 2018
- Add diy for DPrF including D17 and D27 isolated figures · c1999f5b
  Gervaise Henry authored 6 years ago
  
  c1999f5b
- Add QuSAGE for large datasets · ca833df4
  Gervaise Henry authored 6 years ago
  
  ca833df4
Jun 22, 2018
- Finalize (hopefully) DPr analysis (not including KEGG QuSAGE · ab0a1b33
  Gervaise Henry authored 6 years ago
  
  ab0a1b33
- Fix cust functions to handle subset tSNEs · a8edbaf3
  Gervaise Henry authored 6 years ago
  
  a8edbaf3
Jun 20, 2018
- Add D27 funchtion sh · 1518c1ea
  Gervaise Henry authored 6 years ago
  
  1518c1ea
- Fix R data file saves · 734b5553
  Gervaise Henry authored 6 years ago
  
  734b5553
- Change cell size for cust tSNEs from 5 to 2.5 · 46df7d79
  Gervaise Henry authored 6 years ago
  
  46df7d79
- Do try for png heatmap gen for X11 errors · e7069bd2
  Gervaise Henry authored 6 years ago
  
  e7069bd2
- Really update dws sc genesets this time · 844b0298
  Gervaise Henry authored 6 years ago
  
  844b0298
- Update dws sc genesets · 878eb28b
  Gervaise Henry authored 6 years ago
  
  878eb28b
- Update DPr analysis · b7b31ec0
  Gervaise Henry authored 6 years ago
  
  b7b31ec0
- Change stress score binning to 100 · 9734322b
  Gervaise Henry authored 6 years ago
  
  9734322b
Jun 19, 2018
- Add DIY heatmap · 1f915e04
  Gervaise Henry authored 6 years ago
  
  1f915e04
- Update DIY CustCol tSNEs · b727f35c
  Gervaise Henry authored 6 years ago
  
  b727f35c
Jun 18, 2018
- Update DIY bwCol tSNEs · 240f3a4b
  Gervaise Henry authored 6 years ago
  
  240f3a4b
- Add DIY bwCol tSNEs · 0f0882d0
  Gervaise Henry authored 6 years ago
  
  0f0882d0
- Add DIY CustCol and Highlight tSNEs · 33a2c5ba
  Gervaise Henry authored 6 years ago
  
  33a2c5ba
- Add bash scripts for runnting TissueMapper and fix r.scripts to allow the... · 2673f2f8
  Gervaise Henry authored 6 years ago
```
Add bash scripts for runnting TissueMapper and fix r.scripts to allow the pipeline to run from bash script folder
```
  2673f2f8
- Fix VlnPlot for CCA · a5051b9d
  Gervaise Henry authored 6 years ago
  
  a5051b9d