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Commit 01ee610c authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Add pseudotime code

parent d827f4e8
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gc()
library(methods)
library(Seurat)
library(monocle)
library(dplyr)
setwd("../")
source("./r.scripts/sc-TissueMapper.R")
load("./analysis/sc10x.Epi.Rda")
if (!dir.exists("./analysis/pseudotime")){
dir.create("./analysis/pseudotime")
}
scPseudotime(sc10x.Epi,i="Epi.dws.sc",ds=10000)
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