Update README.md

README.md

@@ -12,7 +12,9 @@ Determining cellular heterogeneity in the human prostate with single-cell RNA se
         * PI Email: [douglas.strand@utsouthwestern.edu](mailto:douglas.strand@utsouthwestern.edu)
 * **ANALYZED DATA FOR QUERYING AT: [StrandLab.net](http://strandlab.net/analysis.php)**
 * **Raw data at: [GEO](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE120716) & [GenitoUrinary Development Molecular Anatomy Project (GUDMAP)]("https://doi.org/10.25548/W-R8CM")**
-* **Publication at: [BioRxiv](https://www.biorxiv.org/content/early/2018/10/15/439935)**
+* **Publication at:**
+    * Cell Reports: PENDING
+    * [BioRxiv](https://www.biorxiv.org/content/early/2018/10/15/439935)
 
 Data Analysis
 -------------
@@ -53,7 +55,7 @@ Data Analysis
     * 4 Run on several downsamples from 1 sample from 1st patient
         * run bash script [sc\_TissueMapper\-DS\_D17.sh](https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/blob/master/bash.scripts/sc_TissueMapper-DS_D17.sh)
     * 5 Aggregate and compare several downsamples from #4
-        * run bash script [sc\_TissueMapper\_RUN.DS\_D17.aggr.R](https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/blob/master/r.scripts/sc_TissueMapper_RUN.DS_D17.aggr.R)
+        * run r script [sc\_TissueMapper\_RUN.DS\_D17.aggr.R](https://git.biohpc.swmed.edu/StrandLab/sc-TissueMapper_Pr/blob/master/r.scripts/sc_TissueMapper_RUN.DS_D17.aggr.R)
 * **Pipeline:**
     * Link cellranger count/aggr output to analysis
     * Create demultiplex file to add custom sample groups
@@ -88,8 +90,6 @@ Data Analysis
     * Lineage:
         * "DEG\_Epi_5FC.txt" DWS generated DEGs of epithelia from FACS population (bulk) RNA-sequencing
         * "DEG\_FMSt_5FC.txt" DWS generated DEGs of fibromuscular stroma from FACS population (bulk) RNA-sequencing
-        * "genes.deg.Epi.csv" DWS generated DEGs of epithelial cells from scRNA-Seq of 3 patient aggregate
-        * "genes.deg.St.csv" DWS generated DEGs of stromal cells from scRNA-Seq of 3 patient aggregate
     * Epithelia:
         * "DEG\_BE_5FC.txt" DWS generated DEGs of basal epithelia from FACS population (bulk) RNA-sequencing
         * "DEG\_LE_5FC.txt" DWS generated DEGs of luminal epithelia from FACS population (bulk) RNA-sequencing