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Commit 6af28f5f authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update genesets with new scDEGs, including new Leu set

parent 33aa56f1
No related merge requests found
...@@ -5,8 +5,8 @@ ...@@ -5,8 +5,8 @@
"4","KRT23" "4","KRT23"
"5","RGCC" "5","RGCC"
"6","KRT5" "6","KRT5"
"7","KRT15" "7","DKK1"
"8","DKK1" "8","KRT15"
"9","LAYN" "9","LAYN"
"10","CLDN1" "10","CLDN1"
"11","KRT17" "11","KRT17"
...@@ -15,8 +15,8 @@ ...@@ -15,8 +15,8 @@
"14","PDCD5" "14","PDCD5"
"15","MYC" "15","MYC"
"16","PTRF" "16","PTRF"
"17","KRT7" "17","NCL"
"18","NCL" "18","KRT7"
"19","NPM1" "19","NPM1"
"20","TUBB4B" "20","TUBB4B"
"21","ATP1B3" "21","ATP1B3"
...@@ -33,6 +33,4 @@ ...@@ -33,6 +33,4 @@
"32","RANBP1" "32","RANBP1"
"33","SRM" "33","SRM"
"34","SSB" "34","SSB"
"35","SNRPD1" "35","DEFB1"
"36","HBEGF"
"37","DEFB1"
...@@ -17,65 +17,62 @@ ...@@ -17,65 +17,62 @@
"16","CALCRL" "16","CALCRL"
"17","CFLAR" "17","CFLAR"
"18","ZNF385D" "18","ZNF385D"
"19","HLA-DQB1" "19","ASPH"
"20","ASPH" "20","VWF"
"21","VWF" "21","TPM3"
"22","TPM3" "22","ECSCR.1"
"23","HLA-DPA1" "23","PLVAP"
"24","ECSCR.1" "24","ADGRL4"
"25","PLVAP" "25","S100A10"
"26","ADGRL4" "26","NQO1"
"27","S100A10" "27","SLC7A11"
"28","SLC7A11" "28","MSN"
"29","NQO1" "29","RHOC"
"30","MSN" "30","NOP10"
"31","HLA-DQA1" "31","BACE2"
"32","RHOC" "32","TM4SF18"
"33","ARPC1B" "33","RDX"
"34","NOP10" "34","CLIC1"
"35","BACE2" "35","SWAP70"
"36","FXYD5" "36","DUSP6"
"37","TM4SF18" "37","MRPL33"
"38","HLA-DPB1" "38","PNP"
"39","RDX" "39","MED24"
"40","CLIC1" "40","CNKSR3"
"41","SWAP70" "41","LMO2"
"42","DUSP6" "42","MGST2"
"43","MRPL33" "43","PPFIBP1"
"44","PNP" "44","COL15A1"
"45","MED24" "45","NEURL1B"
"46","CNKSR3" "46","CDC37"
"47","LMO2" "47","RNASE1"
"48","MGST2" "48","ZEB1"
"49","PPFIBP1" "49","ST3GAL6"
"50","COL15A1" "50","RAPGEF5"
"51","NEURL1B" "51","GCLM"
"52","CDC37" "52","SOX17"
"53","RNASE1" "53","RPS18"
"54","ST3GAL6" "54","CDC42EP3"
"55","ZEB1" "55","EMCN"
"56","RAPGEF5" "56","IL3RA"
"57","GCLM" "57","RHOJ"
"58","SOX17" "58","FLT1"
"59","RPS18" "59","CD59"
"60","AP1S2" "60","HSPA8"
"61","CDC42EP3" "61","AFAP1L1"
"62","IL3RA" "62","HLA-B"
"63","EMCN" "63","TRIB3"
"64","RHOJ" "64","PGF"
"65","FLT1" "65","CARHSP1"
"66","CD59" "66","ITM2A"
"67","HSPA8" "67","ITGA2"
"68","PGF" "68","RAB13"
"69","CARHSP1" "69","ARPC5L"
"70","ITM2A" "70","TNPO1"
"71","ITGA2" "71","SH3BP5"
"72","RAB13" "72","KLF2"
"73","ARPC5L" "73","JAG1"
"74","TNPO1" "74","INSR"
"75","UPP1" "75","MMP10"
"76","SH3BP5" "76","CXCL2"
"77","INSR" "77","ANGPT2"
"78","MMP10"
"79","CXCL2"
"80","ANGPT2"
"","x" "","x"
"1","TACSTD2" "1","TACSTD2"
"2","KRT19" "2","KRT19"
"3","LCN2" "3","AQP3"
"4","AQP3" "4","SFN"
"5","SFN" "5","S100P"
"6","S100P" "6","AZGP1"
"7","AZGP1" "7","KRT8"
"8","KRT8" "8","CD24"
"9","CD24" "9","SPINT2"
"10","SPINT2" "10","KRT18"
"11","KRT18" "11","KLF5"
"12","KLF5" "12","AGR2"
"13","AGR2" "13","S100A14"
"14","S100A14" "14","S100A16"
"15","GDF15" "15","ACTG1"
"16","S100A16" "16","CLDN7"
"17","ACTG1" "17","ACTB"
"18","CLDN7" "18","GSTP1"
"19","ACTB" "19","ANXA2"
"20","GSTP1" "20","HMGA1"
"21","ANXA2" "21","PERP"
"22","HMGA1" "22","LAMB3"
"23","CXCL17" "23","ANXA11"
"24","PERP" "24","PLAU"
"25","LAMB3" "25","S100A10"
"26","ANXA11" "26","C15orf48"
"27","PLAU" "27","S100A11"
"28","S100A10" "28","PHLDA2"
"29","S100A11" "29","SLC14A1"
"30","PHLDA2" "30","TSPO"
"31","SLC14A1" "31","CXCL16"
"32","TSPO" "32","MRPS6"
"33","CXCL16" "33","MAL2"
"34","MRPS6" "34","LAMC2"
"35","MAL2" "35","ANXA3"
"36","LAMC2" "36","EPCAM"
"37","ANXA3" "37","VAMP8"
"38","EPCAM" "38","CD9"
"39","VAMP8" "39","CD47"
"40","CD9" "40","TXNIP"
"41","CD47" "41","IFNGR2"
"42","TXNIP" "42","ARHGAP29"
"43","IFNGR2" "43","SERINC2"
"44","ARHGAP29" "44","MYL12B"
"45","MALL" "45","TALDO1"
"46","MYL12B" "46","EZR"
"47","TALDO1" "47","PPDPF"
"48","GPX2" "48","MPZL2"
"49","EZR" "49","GALNT3"
"50","SDCBP2" "50","JUP"
"51","PPDPF" "51","LIMA1"
"52","MPZL2" "52","SH3BGRL3"
"53","GALNT3" "53","PHLDA3"
"54","JUP" "54","NDUFV2"
"55","LIMA1" "55","MYO6"
"56","SH3BGRL3" "56","ACTN4"
"57","PHLDA3" "57","TNFRSF21"
"58","NDUFV2" "58","HEBP2"
"59","MYO6" "59","TPM4"
"60","ACTN4" "60","DSP"
"61","TNFRSF21" "61","HINT1"
"62","HEBP2" "62","MAST4"
"63","TPM4" "63","EHF"
"64","DSP" "64","MAP3K13"
"65","HINT1" "65","DRAP1"
"66","MAST4" "66","MET"
"67","EHF" "67","SDC4"
"68","MAP3K13" "68","KLK11"
"69","DRAP1" "69","SH3YL1"
"70","MET" "70","F3"
"71","SDC4"
"72","KLK11"
"73","SH3YL1"
"74","F3"
...@@ -13,24 +13,24 @@ ...@@ -13,24 +13,24 @@
"12","CFD" "12","CFD"
"13","PDPN" "13","PDPN"
"14","FGF2" "14","FGF2"
"15","ANXA5" "15","MEG3"
"16","MFAP4" "16","ANXA5"
"17","G0S2" "17","MFAP4"
"18","RHOBTB3" "18","G0S2"
"19","HMGA1" "19","RHOBTB3"
"20","LTBP4" "20","LTBP4"
"21","TNFAIP6" "21","HMGA1"
"22","SFRP2" "22","TNFAIP6"
"23","PLAUR" "23","SFRP2"
"24","S100A11" "24","PLAUR"
"25","FGF7" "25","S100A11"
"26","SNCA" "26","FGF7"
"27","PLAT" "27","SNCA"
"28","KCNK1" "28","PLAT"
"29","TNFRSF12A" "29","KCNK1"
"30","DNAJB9" "30","TNFRSF12A"
"31","MPZL1" "31","DNAJB9"
"32","ATP2B1" "32","MPZL1"
"33","FBLN2" "33","FBLN2"
"34","SEC62" "34","SEC62"
"35","LPAR1" "35","LPAR1"
...@@ -40,33 +40,33 @@ ...@@ -40,33 +40,33 @@
"39","PDGFRA" "39","PDGFRA"
"40","REEP5" "40","REEP5"
"41","CLU" "41","CLU"
"42","RND3" "42","ARSG"
"43","ARSG" "43","RND3"
"44","SCARB2" "44","SCARB2"
"45","SPOCK3" "45","SPOCK3"
"46","CTSK" "46","CTSK"
"47","GJA1" "47","GJA1"
"48","NPC2" "48","VCAN"
"49","VCAN" "49","SLC25A37"
"50","SLC25A37" "50","DPT"
"51","DPT" "51","MYDGF"
"52","MYDGF" "52","CXCL8"
"53","CXCL8" "53","UAP1"
"54","UAP1" "54","PDIA6"
"55","PDIA6" "55","HSP90B1"
"56","HSP90B1" "56","HSPA5"
"57","HSPA5" "57","SPON2"
"58","SPON2" "58","MATN2"
"59","MATN2" "59","GPM6B"
"60","GPM6B" "60","CREB5"
"61","EFEMP1" "61","EFEMP1"
"62","CREB5" "62","MANF"
"63","MANF" "63","FST"
"64","FST" "64","CXCL1"
"65","IL33" "65","IL33"
"66","MGP" "66","MGP"
"67","SDF2L1" "67","CD55"
"68","CD55" "68","SDF2L1"
"69","GSN" "69","GSN"
"70","SFRP1" "70","SFRP1"
"71","THBS2" "71","THBS2"
......
...@@ -19,10 +19,10 @@ ...@@ -19,10 +19,10 @@
"18","IL6ST" "18","IL6ST"
"19","VMP1" "19","VMP1"
"20","SMIM14" "20","SMIM14"
"21","CLDN4" "21","H2AFJ"
"22","H2AFJ" "22","CLDN4"
"23","TMPRSS2" "23","HMGCS1"
"24","HMGCS1" "24","TMPRSS2"
"25","CIB1" "25","CIB1"
"26","EMP1" "26","EMP1"
"27","DBI" "27","DBI"
...@@ -33,51 +33,52 @@ ...@@ -33,51 +33,52 @@
"32","GP2" "32","GP2"
"33","ELL2" "33","ELL2"
"34","ALDH1A3" "34","ALDH1A3"
"35","CRYAB" "35","IDH2"
"36","PPP3CA" "36","PPP3CA"
"37","IDH2" "37","PMEPA1"
"38","PMEPA1" "38","ERRFI1"
"39","ERRFI1" "39","RAB27B"
"40","RAB27B" "40","UQCRQ"
"41","UQCRQ" "41","FXYD3"
"42","FXYD3" "42","CRYAB"
"43","RPS27L" "43","RPS27L"
"44","MT1F" "44","MT1F"
"45","LMO7" "45","LMO7"
"46","SOCS2" "46","SOCS2"
"47","RNF213" "47","RNF213"
"48","SLC44A4" "48","SARAF"
"49","SARAF" "49","ELOVL5"
"50","ELOVL5" "50","RASEF"
"51","RASEF" "51","SLC44A4"
"52","SLC39A6" "52","SLC39A6"
"53","SH3BP4" "53","KLK4"
"54","KLK4" "54","SH3BP4"
"55","GDE1" "55","GDE1"
"56","LBH" "56","LBH"
"57","FLJ20021" "57","FLJ20021"
"58","SERF2" "58","SERF2"
"59","RDH10" "59","RDH10"
"60","FNIP2" "60","MALAT1"
"61","MALAT1" "61","ST6GAL1"
"62","ST6GAL1" "62","ABHD2"
"63","ABHD2" "63","NGFRAP1"
"64","NGFRAP1" "64","TSTD1"
"65","PDE4B" "65","PART1"
"66","TSTD1" "66","LCP1"
"67","SLC12A2" "67","MEAF6"
"68","PART1" "68","SLC12A2"
"69","MEAF6" "69","IL1R1"
"70","LCP1" "70","MPC2"
"71","BRI3" "71","SNRPN"
"72","IL1R1" "72","FRMD4B"
"73","MPC2" "73","F11R"
"74","FRMD4B" "74","ATP1A1"
"75","SNRPN" "75","SEMA4B"
"76","F11R" "76","AIM1"
"77","ATP1A1" "77","MACF1"
"78","SEMA4B" "78","ZFP36"
"79","ZFP36" "79","TGIF1"
"80","TGIF1" "80","ID1"
"81","ID1" "81","MALL"
"82","CEACAM1" "82","CEACAM1"
"83","BIRC3"
"","x"
"1","C1QA"
"2","TYROBP"
"3","C1QB"
"4","RGS1"
"5","FCER1G"
"6","LAPTM5"
"7","CCL3"
"8","EREG"
"9","GPR183"
"10","C1QC"
"11","CST7"
"12","RNASE6"
"13","CXCR4"
"14","SPI1"
"15","CYTIP"
"16","CCR7"
"17","OLR1"
"18","AIF1"
"19","PTPRC"
"20","IGSF6"
"21","LST1"
"22","MS4A6A"
"23","MS4A7"
"24","ALOX5AP"
"25","EVI2B"
"26","SAMSN1"
"27","CD48"
"28","LILRB4"
"29","ITGAX"
"30","C5AR1"
"31","VSIG4"
"32","CD37"
"33","FCGR2A"
"34","ST8SIA4"
"35","ITGB2"
"36","CD53"
"37","CSF2RA"
"38","MS4A4A"
"39","PLA2G7"
"40","FGL2"
"41","CD14"
"42","FAM26F"
"43","LY96"
"44","SERPINB9"
"45","KYNU"
"46","FAM49A"
"47","LYZ"
"48","ABCA1"
"49","IFI30"
"50","SLC16A10"
"51","GPSM3"
"52","APOC1"
"53","SLC11A1"
"54","TGFBI"
"55","HLA-DMB"
"56","CD83"
"57","DOCK4"
"58","PDE4DIP"
"59","ARRB2"
"60","RNF130"
"61","PFKFB3"
"62","NINJ1"
"63","C1orf54"
"64","ACP5"
"65","VIM"
"66","CARD16"
"67","OGFRL1"
"68","WIPF1"
"69","MAFB"
"70","NBN"
"71","JARID2"
"72","APOE"
"73","TPP1"
"74","SMAP2"
"75","RGS2"
"76","LGALS1"
"77","UPP1"
"78","STX11"
"79","CD68"
"80","PTPRE"
"81","CTSD"
"82","ARHGDIB"
"83","RALA"
"84","ZEB2"
"85","ATP6V1F"
"86","BTG1"
"87","CTSL"
"88","SLC2A3"
"89","RHOG"
"90","ASAH1"
"91","THBS1"
"92","GNA13"
"93","RNASET2"
"94","GPX1"
"95","SLC16A3"
"96","PSAP"
"97","DDIT4"
"98","SEC11A"
"99","REL"
"100","HLA-DMA"
"101","ARL4C"
"102","C6orf48"
"103","GPR137B"
"104","CREG1"
"105","SDC2"
"106","CYBA"
"107","CTSS"
"108","HIST3H2A"
"109","FCGRT"
"110","IL1R2"
"111","CLEC2B"
"112","HIF1A"
"113","CTSB"
"114","SLC44A1"
"115","PID1"
"116","SLC6A6"
"117","CXCL3"
"118","ID2"
"119","GPX4"
"120","CST3"
"121","SGK1"
"122","ARL6IP5"
"123","SDCBP"
"124","ATP13A3"
"125","FAM49B"
"126","CMTM6"
"127","RGS10"
"128","CARD19"
"129","RIPK2"
"130","RILPL2"
"131","GRB2"
"132","GSTO1"
"133","AREG"
"","x" "","x"
"1","SCGB3A1" "1","SCGB3A1"
"2","PIGR" "2","LCN2"
"3","OLFM4" "3","PIGR"
"4","FCGBP" "4","OLFM4"
"5","LTF" "5","FCGBP"
"6","WFDC2" "6","LTF"
"7","SLPI" "7","GDF15"
"8","FAM3D" "8","WFDC2"
"9","PI3" "9","FAM3D"
"10","C15orf48" "10","SLPI"
"11","MMP7" "11","PI3"
"12","SERPINB3" "12","DUOXA2"
"13","ANKRD36C" "13","MMP7"
"14","ZG16B" "14","CXCL17"
"15","CXCL6" "15","SERPINB3"
"16","RHOV" "16","CXCL6"
"17","CRABP2" "17","ZG16B"
"18","ASS1" "18","ANKRD36C"
"19","TMEM45B" "19","GLUL"
"20","CEACAM6" "20","RHOV"
"21","S100A6" "21","DUSP5"
"22","TMSB4X" "22","CRABP2"
"23","ATP1B1" "23","ADGRF1"
"24","RARRES3" "24","CEACAM6"
"25","CP" "25","ATP1B1"
"26","ELF3" "26","ASS1"
"27","VSIG2" "27","TMEM45B"
"28","TSPAN1" "28","S100A6"
"29","BIK" "29","TSPAN1"
"30","PDZK1IP1" "30","CP"
"31","AGR3" "31","ELF3"
"32","CEACAM5" "32","BIK"
"33","RNF39" "33","PDZK1IP1"
"34","FTH1" "34","RARRES3"
"35","SRD5A3" "35","VSIG2"
"36","FOXO3" "36","AGR3"
"37","LINC01207" "37","FOXO3"
"38","ANXA1" "38","SRD5A3"
"39","TMEM165" "39","CEACAM5"
"40","CYP3A5" "40","LINC01207"
"41","HIGD1A" "41","RNF39"
"42","CCL28" "42","HIGD1A"
"43","TSPAN13" "43","CYP3A5"
"44","HIST1H2AC" "44","TSPAN13"
"45","RAB11FIP1" "45","HIST1H2BC"
"46","REEP3" "46","CCL28"
"47","HIST1H2BC" "47","HIST1H2AC"
"48","TSPAN3" "48","RAB11FIP1"
"49","SERINC2" "49","TMEM165"
"50","HIST1H1C" "50","ANXA1"
"51","ZFP36L1" "51","HIST1H1C"
"52","ZFP36L1"
...@@ -2,19 +2,17 @@ ...@@ -2,19 +2,17 @@
"1","AKR1C2" "1","AKR1C2"
"2","IGFBP3" "2","IGFBP3"
"3","DHRS9" "3","DHRS9"
"4","KRT6A" "4","GPX2"
"5","FABP5" "5","KRT6A"
"6","KRT13" "6","FABP5"
"7","HSPA1B" "7","KRT13"
"8","UBR4" "8","SDCBP2"
"9","SDC1" "9","KIAA1551"
"10","HECTD1" "10","UBR4"
"11","B4GALT4" "11","HSPA1B"
"12","FA2H" "12","SDC1"
"13","AKR1C3" "13","IL1RN"
"14","TMPRSS4" "14","HECTD1"
"15","IL1RN" "15","LYPD3"
"16","LYPD3" "16","AKR1C3"
"17","MSLN" "17","HSPA1A"
"18","HSPA1A"
"19","AKAP12"
...@@ -7,48 +7,46 @@ ...@@ -7,48 +7,46 @@
"6","EPAS1" "6","EPAS1"
"7","ADAMTS4" "7","ADAMTS4"
"8","IFITM3" "8","IFITM3"
"9","GAPDH" "9","TINAGL1"
"10","TINAGL1" "10","ADRA2A"
"11","ADRA2A" "11","STEAP4"
"12","STEAP4" "12","IFITM2"
"13","SRGN" "13","MT1A"
"14","IFITM2" "14","NGF"
"15","MT1A" "15","ACTA2"
"16","NGF" "16","MCAM"
"17","ACTA2" "17","PDK4"
"18","MCAM" "18","KCNE4"
"19","PDK4" "19","MTHFD2"
"20","KCNE4" "20","CRISPLD2"
"21","MTHFD2" "21","FOXC2"
"22","CRISPLD2" "22","ADAMTS1"
"23","FOXC2" "23","PROCR"
"24","ADAMTS1" "24","HES4"
"25","PROCR" "25","SYNPO2"
"26","HES4" "26","PDGFRB"
"27","SYNPO2" "27","TIMP3"
"28","PDGFRB" "28","PPP1R14A"
"29","TIMP3" "29","TPM1"
"30","PPP1R14A" "30","COL4A1"
"31","TPM1" "31","RGS16"
"32","COL4A1" "32","PI15"
"33","RGS16" "33","MYLK"
"34","PI15" "34","LPP"
"35","MYLK" "35","CDKN1A"
"36","LPP" "36","ZBTB38"
"37","CDKN1A" "37","SLC25A4"
"38","ZBTB38" "38","CTSC"
"39","SLC25A4" "39","ISG15"
"40","CTSC" "40","HIPK2"
"41","ISG15" "41","NDUFS2"
"42","HIPK2" "42","C2orf40"
"43","NDUFS2" "43","HES1"
"44","C2orf40" "44","HSPB1"
"45","HES1" "45","NR2F2"
"46","HSPB1" "46","ZFHX3"
"47","NR2F2" "47","ZNF503"
"48","ZFHX3" "48","C8orf4"
"49","ZNF503" "49","KLF6"
"50","C8orf4" "50","SNAI2"
"51","KLF6" "51","RHOB"
"52","SNAI2"
"53","RHOB"
...@@ -21,10 +21,10 @@ ...@@ -21,10 +21,10 @@
"20","AKAP12" "20","AKAP12"
"21","IER3" "21","IER3"
"22","PMP22" "22","PMP22"
"23","COL6A2" "23","SRGN"
"24","SERPING1" "24","COL6A2"
"25","CTSL" "25","SERPING1"
"26","MEG3" "26","CTSL"
"27","SPARC" "27","SPARC"
"28","BNIP3L" "28","BNIP3L"
"29","MT2A" "29","MT2A"
...@@ -92,22 +92,21 @@ ...@@ -92,22 +92,21 @@
"91","ANKRD28" "91","ANKRD28"
"92","GLIS3" "92","GLIS3"
"93","IL32" "93","IL32"
"94","JAG1" "94","NINJ1"
"95","NINJ1" "95","ARID5A"
"96","ARID5A" "96","CFH"
"97","CFH" "97","TBX3"
"98","TBX3" "98","BST2"
"99","BST2" "99","GABARAPL1"
"100","GABARAPL1" "100","SERPINH1"
"101","SERPINH1" "101","INSIG1"
"102","INSIG1" "102","PTP4A1"
"103","PTP4A1" "103","ID3"
"104","ID3" "104","SERPINF1"
"105","SERPINF1" "105","GADD45B"
"106","GADD45B" "106","ZFP36"
"107","ZFP36" "107","CXCL3"
"108","CXCL3" "108","TFPI2"
"109","TFPI2" "109","TM4SF1"
"110","TM4SF1" "110","HSPA1A"
"111","HSPA1A" "111","DUSP1"
"112","DUSP1"
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