Update bash.script folder references & .gitignore *.err + *.out

.gitignore

 analysis/
+*.err
+*.out
\ No newline at end of file

bash.scripts/sc_FullAnalysis-Pr.sh

@@ -33,18 +33,18 @@
 module load R/3.3.2-gccmkl
 
 # COMMAND GROUP 1
-Rscript sc_Demultiplex.R
-Rscript sc_D-SampleReorder.R
-Rscript sc_Seurat.Score.CellCycle.R
-Rscript sc_QC.R
-Rscript sc_Cluster.R
-Rscript sc_PC.Score.Stress.R
-Rscript sc_QuSAGE.Lineage.R
-Rscript sc_QuSAGE.Epi.R
-Rscript sc_QuSAGE.St.R
-Rscript sc_PC.Score.NE.R
-Rscript sc_QuSAGE.LGEA.Epi.R
-Rscript sc_QuSAGE.LGEA.St.R
-Rscript sc_DEG.R
-Rscript sc_Tables.R
+Rscript ../r.scripts/sc_Demultiplex.R
+Rscript ../r.scritps/sc_D-SampleReorder.R
+Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R
+Rscript ../r.scripts/sc_QC.R
+Rscript ../r.scripts/sc_Cluster.R
+Rscript ../r.scripts/sc_PC.Score.Stress.R
+Rscript ../r.scripts/sc_QuSAGE.Lineage.R
+Rscript ../r.scripts/sc_QuSAGE.Epi.R
+Rscript ../r.scripts/sc_QuSAGE.St.R
+Rscript ../r.scripts/sc_PC.Score.NE.R
+Rscript ../r.scripts/sc_QuSAGE.LGEA.Epi.R
+Rscript ../r.scripts/sc_QuSAGE.LGEA.St.R
+Rscript ../r.scripts/sc_DEG.R
+Rscript ../r.scripts/sc_Tables.R
 # END OF SCRIPT