From 4f0ac3e5fa58363eebed447f9cc6e1b82223db11 Mon Sep 17 00:00:00 2001
From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu>
Date: Mon, 12 Feb 2018 10:41:03 -0600
Subject: [PATCH] Update bash.script folder references & .gitignore *.err +
 *.out

---
 .gitignore                         |  2 ++
 bash.scripts/sc_FullAnalysis-Pr.sh | 28 ++++++++++++++--------------
 2 files changed, 16 insertions(+), 14 deletions(-)

diff --git a/.gitignore b/.gitignore
index 4ff76e6..ae480bc 100755
--- a/.gitignore
+++ b/.gitignore
@@ -1 +1,3 @@
 analysis/
+*.err
+*.out
\ No newline at end of file
diff --git a/bash.scripts/sc_FullAnalysis-Pr.sh b/bash.scripts/sc_FullAnalysis-Pr.sh
index 4c3178b..abfa320 100755
--- a/bash.scripts/sc_FullAnalysis-Pr.sh
+++ b/bash.scripts/sc_FullAnalysis-Pr.sh
@@ -33,18 +33,18 @@
 module load R/3.3.2-gccmkl
 
 # COMMAND GROUP 1
-Rscript sc_Demultiplex.R
-Rscript sc_D-SampleReorder.R
-Rscript sc_Seurat.Score.CellCycle.R
-Rscript sc_QC.R
-Rscript sc_Cluster.R
-Rscript sc_PC.Score.Stress.R
-Rscript sc_QuSAGE.Lineage.R
-Rscript sc_QuSAGE.Epi.R
-Rscript sc_QuSAGE.St.R
-Rscript sc_PC.Score.NE.R
-Rscript sc_QuSAGE.LGEA.Epi.R
-Rscript sc_QuSAGE.LGEA.St.R
-Rscript sc_DEG.R
-Rscript sc_Tables.R
+Rscript ../r.scripts/sc_Demultiplex.R
+Rscript ../r.scritps/sc_D-SampleReorder.R
+Rscript ../r.scripts/sc_Seurat.Score.CellCycle.R
+Rscript ../r.scripts/sc_QC.R
+Rscript ../r.scripts/sc_Cluster.R
+Rscript ../r.scripts/sc_PC.Score.Stress.R
+Rscript ../r.scripts/sc_QuSAGE.Lineage.R
+Rscript ../r.scripts/sc_QuSAGE.Epi.R
+Rscript ../r.scripts/sc_QuSAGE.St.R
+Rscript ../r.scripts/sc_PC.Score.NE.R
+Rscript ../r.scripts/sc_QuSAGE.LGEA.Epi.R
+Rscript ../r.scripts/sc_QuSAGE.LGEA.St.R
+Rscript ../r.scripts/sc_DEG.R
+Rscript ../r.scripts/sc_Tables.R
 # END OF SCRIPT
-- 
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