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Commit 0a5e6878 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix lin subset if unknown present

parent becb0f99
1 merge request!2Merge develop into master
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r.scripts/sc-TissueMapper_RUN.Pd.R
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...@@ -186,6 +186,7 @@ results.clust.Lin.id <- results[[3]] ...@@ -186,6 +186,7 @@ results.clust.Lin.id <- results[[3]]
rm(results) rm(results)
rm(gene.set) rm(gene.set)
sc10x <- SetAllIdent(object=sc10x,id="Lin")
sc10x.Epi <- scSubset(sc10x,i="Lin",g="Epi") sc10x.Epi <- scSubset(sc10x,i="Lin",g="Epi")
if (any(levels(sc10x@ident)=="Unknown")){ if (any(levels(sc10x@ident)=="Unknown")){
sc10x.St <- scSubset(sc10x,i="Lin",g=c("St","Unknown")) sc10x.St <- scSubset(sc10x,i="Lin",g=c("St","Unknown"))
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