From 0a5e6878d4d0f5cd72b7abdd9d1aa92f8fda0b54 Mon Sep 17 00:00:00 2001 From: "Gervaise H. Henry" <gervaise.henry@utsouthwestern.edu> Date: Fri, 28 Sep 2018 14:16:09 -0500 Subject: [PATCH] Fix lin subset if unknown present --- r.scripts/sc-TissueMapper_RUN.Pd.R | 1 + 1 file changed, 1 insertion(+) diff --git a/r.scripts/sc-TissueMapper_RUN.Pd.R b/r.scripts/sc-TissueMapper_RUN.Pd.R index 63b7f51..2b76a12 100644 --- a/r.scripts/sc-TissueMapper_RUN.Pd.R +++ b/r.scripts/sc-TissueMapper_RUN.Pd.R @@ -186,6 +186,7 @@ results.clust.Lin.id <- results[[3]] rm(results) rm(gene.set) +sc10x <- SetAllIdent(object=sc10x,id="Lin") sc10x.Epi <- scSubset(sc10x,i="Lin",g="Epi") if (any(levels(sc10x@ident)=="Unknown")){ sc10x.St <- scSubset(sc10x,i="Lin",g=c("St","Unknown")) -- GitLab