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Commit a509cca5 authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Merge branch '2021_NewPaper' into 'develop'

2021 new paper

See merge request !95
parents 97af91da 627a0e10
3 merge requests!99Develop,!96Develop,!952021 new paper
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---
title: "Human Normal and BPH Prostate: Epithelial Cells"
description: "Manuscript Submitted (cellxgene)"
name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - Epithelial Cells "
date: 2019-12-24T21:46:39-06:00
draft: false
weight: "2"
type: "custom"
layout: "cellxgene"
pending: true
cellxgene: true
cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_epi.h5ad/"
current: true
location: ""
---
---
title: "Human Normal and BPH Prostate: Fibromuscular Stromal Cells"
description: "Manuscript Submitted (cellxgene)"
name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - Fibromuscular Stromal Cells "
date: 2019-12-24T21:46:39-06:00
draft: false
weight: "3"
type: "custom"
layout: "cellxgene"
pending: true
cellxgene: true
cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_fmst.h5ad/"
current: true
location: ""
---
---
title: "Human Normal and BPH Prostate: Leukocyte Cells"
description: "Manuscript Submitted (cellxgene)"
name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - Leukocyte Cells "
date: 2019-12-24T21:46:39-06:00
draft: false
weight: "4"
type: "custom"
layout: "cellxgene"
pending: true
cellxgene: true
cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_leu.h5ad/"
current: true
location: ""
---
---
title: "Mouse Prostate and Urethral: All Cells"
description: "Manuscript Submitted (cellxgene)"
name: "2021 Prostate Fibroblast Paper: Mouse Prostate and Urethral - All Cells"
date: 2019-12-24T21:46:39-06:00
draft: false
weight: "5"
type: "custom"
layout: "cellxgene"
pending: true
cellxgene: true
cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/muPrUr_id_all.h5ad/"
current: true
location: ""
---
---
title: "Mouse Prostate and Urethral: Epithelial Cells"
description: "Manuscript Submitted (cellxgene)"
name: "2021 Prostate Fibroblast Paper: Mouse Prostate and Urethral - Epithelial Cells"
date: 2019-12-24T21:46:39-06:00
draft: true
weight: "5"
type: "custom"
layout: "cellxgene"
pending: true
cellxgene: true
cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/muPrUr_id_epi.h5ad/"
current: true
location: ""
---
---
title: "Mouse Prostate and Urethral: Fibromuscular Stromal Cells"
description: "Manuscript Submitted (cellxgene)"
name: "2021 Prostate Fibroblast Paper: Mouse Prostate and Urethral - Fibromuscular Stromal Cells"
date: 2019-12-24T21:46:39-06:00
draft: false
weight: "5"
type: "custom"
layout: "cellxgene"
pending: true
cellxgene: true
cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/muPrUr_id_fmst.h5ad/"
current: true
location: ""
---
......@@ -7,6 +7,7 @@ draft: false
weight: "1"
type: "custom"
layout: "hu.Pd.deep"
pending: false
cellxgene: false
cxg_link: ""
current: true
......
......@@ -7,6 +7,7 @@ draft: false
weight: "3"
type: "custom"
layout: "mu.PrUr"
pending: false
cellxgene: false
cxg_link: ""
current: true
......
[
{"id": "disease", "parent": "#", "text": "Disease Phenotype", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "disease.d", "parent":"disease", "text": "Donor (normal)"},
{"id": "disease.b", "parent":"disease", "text": "BPH"},
{"id": "disease.c", "parent":"disease", "text": "Prostate Cancer"},
{"id": "demographics", "parent": "#", "text": "Demographics", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "ethnicity", "parent":"demographics", "text": "Ethnicity", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "ethn.aa", "parent":"ethnicity", "text": "African American"},
{"id": "ethn.as", "parent":"ethnicity", "text": "Asian"},
{"id": "ethn.ca", "parent":"ethnicity", "text": "Caucasian"},
{"id": "ethn.hi", "parent":"ethnicity", "text": "Hispanic"},
{"id": "ethn.uk", "parent":"ethnicity", "text": "Unknown Ethnicity"},
{"id": "age", "parent":"demographics", "text": "Age", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "age.40", "parent":"age", "text": "<40yo"},
{"id": "age.50", "parent":"age", "text": "41-50yo"},
{"id": "age.60", "parent":"age", "text": "51-60yo"},
{"id": "age.70", "parent":"age", "text": "61-70yo"},
{"id": "age.80", "parent":"age", "text": "71-80yo"},
{"id": "age.90", "parent":"age", "text": "81-90yo"},
{"id": "age.100", "parent":"age", "text": "91+yo"},
{"id": "age.uk", "parent":"age", "text": "Unknown Age"},
{"id": "clinical", "parent":"#", "text": "Clinical Features", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "bmi", "parent":"clinical", "text": "BMI", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "bmi.uw", "parent":"bmi", "text": "Underweight"},
{"id": "bmi.nw", "parent":"bmi", "text": "Normal"},
{"id": "bmi.ow", "parent":"bmi", "text": "Overweight"},
{"id": "bmi.ob", "parent":"bmi", "text": "Obese"},
{"id": "bmi.vo", "parent":"bmi", "text": "Very Obese"},
{"id": "bmi.so", "parent":"bmi", "text": "Severely Obese"},
{"id": "bmi.uk", "parent":"bmi", "text": "Unknown BMI"},
{"id": "t2d", "parent":"clinical", "text": "Type 2 Diabetes", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "t2d.y", "parent":"t2d", "text": "Yes"},
{"id": "t2d.n", "parent":"t2d", "text": "No"},
{"id": "t2d.uk", "parent":"t2d", "text": "Unknown"},
{"id": "bph", "parent":"clinical", "text": "BPH Features", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "bphsurgery", "parent":"bph", "text": "BPH Surgery", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "bphsurg.simp", "parent":"bphsurgery", "text": "Simple Prostatectomy"},
{"id": "bphsurg.turp", "parent":"bphsurgery", "text": "TURP"},
{"id": "bphsurg.uk", "parent":"bphsurgery", "text": "Unknown Surgery"},
{"id": "5ari", "parent":"bph", "text": "5ARI", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "5ari.y", "parent":"5ari", "text": "Yes 5ARI"},
{"id": "5ari.n", "parent":"5ari", "text": "No 5ARI"},
{"id": "5ari.uk", "parent":"5ari", "text": "Unknown 5ARI"},
{"id": "5aril", "parent":"bph", "text": "5ARI Length (months)", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "5aril.10", "parent":"5aril", "text": "<10mnths 5ARI"},
{"id": "5aril.20", "parent":"5aril", "text": "10-20mnths 5ARI"},
{"id": "5aril.30", "parent":"5aril", "text": "20+mnths 5ARI"},
{"id": "5aril.uk", "parent":"5aril", "text": "Unknown 5ARI"},
{"id": "5aril.na", "parent":"5aril", "text": "NA 5ARI"},
{"id": "prostatevol", "parent":"clinical", "text": "Prostate Volume", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "prvol.low", "parent":"prostatevol", "text": "Low Volumne"},
{"id": "prvol.med", "parent":"prostatevol", "text": "Medium Volume"},
{"id": "prvol.hi", "parent":"prostatevol", "text": "High Volume"},
{"id": "prvol.vhi", "parent":"prostatevol", "text": "Very High Volume"},
{"id": "prvol.uk", "parent":"prostatevol", "text": "Unknown Volume"},
{"id": "repo", "parent":"#", "text": "Repository", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "repo.pr", "parent":"repo", "text": "Prostate", "a_attr": { "class": "no_checkbox" }, "disabled": true},
{"id": "repo.pr.cry", "parent":"repo.pr", "text": "Pr Cryopreserved Cells"},
{"id": "repo.pr.ff", "parent":"repo.pr", "text": "Pr Flash Frozen Tissue"},
{"id": "repo.pr.ffpe", "parent":"repo.pr", "text": "Pr FFPE"},
{"id": "repo.pr.oct", "parent":"repo.pr", "text": "Pr OCT"},
{"id": "repo.bl", "parent":"repo", "text": "Bladder"},
{"id": "repo.sv", "parent":"repo", "text": "Seminal Vesicle"},
{"id": "repo.vd", "parent":"repo", "text": "Vas Deference"},
{"id": "repo.ut", "parent":"repo", "text": "Ureter"}
]
\ No newline at end of file
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......@@ -71,23 +71,10 @@
<div class="row">
<div class="columnImg">
<p class="GenesName" style="background-color:black;"></p>
<img class="Genes img" src="/gene.cloud/Genes.2020YTD.20201028.png"
alt="Genes searched in 2020 (YTD: 20201028)">
<img class="Genes img" src="/gene.cloud/Genes.202009.png"
alt="Genes searched in September 2020">
<img class="Genes img" src="/gene.cloud/Genes.202008.png"
alt="Genes searched in August 2020">
<img class="Genes img" src="/gene.cloud/Genes.202007.png"
alt="Genes searched in July 2020">
<img class="Genes img" src="/gene.cloud/Genes.202006.png"
alt="Genes searched in June 2020">
<img class="Genes img" src="/gene.cloud/Genes.202005.png"
alt="Genes searched in May 2020">
<img class="Genes img" src="/gene.cloud/Genes.202004.png"
alt="Genes searched in April 2020">
<img class="Genes img" src="/gene.cloud/Genes.202003.png"
alt="Genes searched in March 2020">
</div>
<img class="Genes img" src="/gene.cloud/Genes.hu.2020.png"
alt="Human Genes searched in 2020 using the legacy visualization">
<img class="Genes img" src="/gene.cloud/Genes.mu.2020.png"
alt="Mouse Genes searched in 2020 using the legacy visualization">
</div>
<div class="row">
<div class="columnNav">
......@@ -102,12 +89,18 @@
</div>
<div class="content">
<hr>
<h2>Visualization with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></h2>
{{ range where .Pages.ByWeight "Params.cellxgene" true }}
<h2>Visualization of Published Data with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></h2>
{{ range where (where .Pages.ByWeight "Params.cellxgene" true) "Params.pending" false}}
<li><b><a href="{{ .Params.cxg_link }}" target="_blank">{{.Params.name}}</a></b></li>
{{ end }}
<br>
<hr>
<h2><i>Visualization of Unpublished Data with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></i></h2>
{{ range where (where .Pages.ByWeight "Params.cellxgene" true) "Params.pending" true}}
<li><b><a href="{{.Permalink}}">{{.Params.name}}</a></b></li>
{{ end }}
<br>
<hr>
<h2>Legacy Visualization</h2>
{{ range where .Pages.ByWeight "Params.cellxgene" false }}
<li><b><a href="{{.Permalink}}">{{.Params.name}}</a></b></li>
......
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