Merge branch '2021_NewPaper' into 'develop'

2021 new paper

See merge request !95

.gitlab-ci.yml

@@ -2,8 +2,8 @@ variables:
   GIT_SUBMODULE_STRATEGY: recursive
 
 before_script:
-  - module load singularity/3.0.2
-  - module load awscli
+  - module load singularity/3.5.3
+  - module load awscli/1.11.139
 
 stages:
   - build_stage
@@ -13,30 +13,30 @@ stages:
 build.dev:
   stage: build_stage
   script:
-  - singularity run 'docker://monachus/hugo' hugo --baseURL http://dev.strandlab.net/
+    - singularity run 'docker://monachus/hugo' hugo --baseURL http://dev.strandlab.net/
   artifacts:
     paths:
-    - public/
+      - public/
     expire_in: 1 week
   cache:
     paths:
-    - public/
+      - public/
   except:
     - tags
 
 build.live:
   stage: build_stage
   script:
-  - singularity run 'docker://monachus/hugo' hugo
+    - singularity run 'docker://monachus/hugo' hugo
   artifacts:
     paths:
-    - public/
+      - public/
     expire_in: 1 week
   cache:
     paths:
-    - public/
+      - public/
   only:
-  - tags
+    - tags
 
 test:
   stage: test_stage
@@ -46,17 +46,17 @@ test:
 deploy.dev:
   stage: deploy_stage
   script:
-  - singularity run 'docker://monachus/hugo' hugo deploy --target aws-dev --maxDeletes -1
+    - singularity run 'docker://monachus/hugo' hugo deploy --target aws-dev --maxDeletes -1
   dependencies:
-  - build.dev
+    - build.dev
   only:
-  - master
+    - master
   except:
-  - tags
+    - tags
 
 deploy.live:
   stage: deploy_stage
   script:
-  - singularity run 'docker://monachus/hugo' hugo deploy --target aws --maxDeletes -1
+    - singularity run 'docker://monachus/hugo' hugo deploy --target aws --maxDeletes -1
   only:
-  - tags
\ No newline at end of file
+    - tags

archetypes/sc.data.md

@@ -7,6 +7,7 @@ draft: true
 weight: ""
 type: "custom"
 layout: ""
+pending: false
 cellxgene: false
 cxg_link: ""
 current: true

content/sc.data/PdPgb.md

@@ -7,6 +7,7 @@ draft: false
 weight: "2"
 type: "custom"
 layout: "hu.PdPgb"
+pending: false
 cellxgene: false
 cxg_link: ""
 current: true

content/sc.data/cellxgene_huPr_Pd_all.md → content/sc.data/cellxgene_2018CellReports_huPr_Pd_all.md

 ---
 title: "Human Normal Prostate: All Cells"
 description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
-name: "Human Normal Prostate: All Cells"
+name: "2018 Cell Reports: Human Normal Prostate - All Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "1"
+weight: "10"
 type: "custom"
 layout: "cellxgene"
+pending: false
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/dd811609-3d83-4bdb-801f-d6c6c93d1a9e.cxg/"
 current: true

content/sc.data/cellxgene_huPr_Pd_epi.md → content/sc.data/cellxgene_2018CellReports_huPr_Pd_epi.md

 ---
-title: "Human Normal Prostate: Epithelial Cells"
+title: "2018 Human Normal Prostate: Epithelial Cells"
 description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
-name: "Human Normal Prostate: Epithelial Cells"
+name: "2018 Cell Reports: Human Normal Prostate - Epithelial Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "2"
+weight: "11"
 type: "custom"
 layout: "cellxgene"
+pending: false
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/47d05a66-7b83-4439-ad18-180d4c262f7a.cxg/"
 current: true

content/sc.data/cellxgene_huPr_Pd_fmst.md → content/sc.data/cellxgene_2018CellReports_huPr_Pd_fmst.md

 ---
-title: "Human Normal Prostate: Fibromuscular Cells"
+title: "Human Normal Prostate: Fibromuscular Stromal Cells"
 description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
-name: "Human Normal Prostate: Fibromuscular Cells"
+name: "2018 Cell Reports: Human Normal Prostate - Fibromuscular Stromal Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "2"
+weight: "12"
 type: "custom"
+pending: false
 layout: "cellxgene"
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/e0802089-01a0-4e3a-9dbf-03eac64b15d9.cxg/"

content/sc.data/cellxgene_huPr_PdPgb_epi.md → content/sc.data/cellxgene_2020Prostate_huPr_PdPgb_epi.md

 ---
 title: "Human Normal and BPH Prostate: Epithelial Cells"
 description: "As published in 2020 Prostate (cellxgene)"
-name: "Human Normal and BPH Prostate: Epithelial Cells"
+name: "2020 Prostate: Human Normal and BPH Prostate - Epithelial Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "4"
+weight: "8"
 type: "custom"
+pending: false
 layout: "cellxgene"
 cellxgene: true
 cxg_link: "https://cellxgene.cziscience.com/d/599b5549-3611-41e1-884f-d5c16b2efd31.cxg/"

content/sc.data/cellxgene_muPrUr_epi.md → content/sc.data/cellxgene_2020Prostate_muPrUr_epi.md

 ---
 title: "Mouse Prostate and Urethral: Epithelial Cells"
 description: "As published in 2020 The Prostate (cellxgene)"
-name: "Mouse Prostate and Urethral: Epithelial Cells"
+name: "2020 Prostate: Mouse Prostate and Urethral - Epithelial Cells"
 date: 2019-12-24T21:46:39-06:00
 draft: false
-weight: "5"
+weight: "9"
 type: "custom"
 layout: "cellxgene"
 cellxgene: true

content/sc.data/cellxgene_2021_huPr_PdPb_all.md

+---
+title: "Human Normal and BPH Prostate: All Cells"
+description: "Manuscript Submitted (cellxgene)"
+name: "2021 Prostate Fibroblast Paper: Human Normal and BPH Prostates - All Cells "
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "1"
+type: "custom"
+layout: "cellxgene"
+pending: true
+cellxgene: true
+cxg_link: "https://cellxgene.strandlab.net/view/PublishedData/2021/huPr_PdPb_id_all.h5ad/"
+current: true
+location: ""
+---
+