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Commit 96499f4e authored by Gervaise Henry's avatar Gervaise Henry
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Edit data descriptions and references

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layouts/custom/hu.Pd.deep.html
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<span style="font-size:16px; font-weight:bold;">Experimental details:</span> <span style="font-size:16px; font-weight:bold;">Experimental details:</span>
<br> <br>
<span style="font-size:16px;"> <span style="font-size:16px;">
Single Cell RNA-Sequencing was conducted on 32,194 cells from peripheral zone and transition zone from Single Cell RNA-Sequencing was conducted on cells from peripheral zone and transition zone from the
the prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were clustered
clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can and identified by correlation of their transcriptomes to known cell types. Gene expression can be
be compared by population identity, cell lineage, patient, or dissected prostatic zone. This data is the compared by population identity, cell lineage, dissected prostatic region. This data is the result of
result of additional sequencing done on the same samples post publication, and projected in UMAP space. additional sequencing done on the same samples post publication, and projected in UMAP space.
</span> </span>
</div> </div>
</div> </div>
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<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=30566875" <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=30566875"
target="_blank">Cell Reports</a></span></div> target="_blank">Cell Reports</a></span></div>
<div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div> <div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145843"
target="_blank">Deeper Sequencing GEO: GSE145843</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW"
target="_blank">Deeper Sequencing GUDMAP: 16-WPBW</a></span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117403" <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117403"
target="_blank">GEO: target="_blank">Original GEO: GSE117403</a></span></div>
GSE117403</a></span></div> <div><span style="font-size:16px;"><a href="https://doi.org/10.25548/W-R8CM" target="_blank">Original GUDMAP:
<div><span style="font-size:16px;"><a href="https://doi.org/10.25548/W-R8CM" target="_blank">GUDMAP:
W-R8CM</a></span></div> W-R8CM</a></span></div>
</div> </div>
</div> </div>
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layouts/custom/hu.PdPgb.html
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<span style="font-size:16px; font-weight:bold;">Experimental details:</span> <span style="font-size:16px; font-weight:bold;">Experimental details:</span>
<br> <br>
<span style="font-size:16px;"> <span style="font-size:16px;">
Single Cell RNA-Sequencing was conducted on 32,194 cells from peripheral zone and transition zone from Single Cell RNA-Sequencing was conducted on cells from normal and BPH diseased prostates using the 10x
the prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were Genomics platform. The cells were clustered and identified by correlation of their transcriptomes to
clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can known cell types. Gene expression can be compared by population identity, cell lineage, dissected
be compared by population identity, cell lineage, patient, or dissected prostatic zone. This data is the prostatic region, and disease phenotype.
result of additional sequencing done on the same samples post publication, and projected in UMAP space.
</span> </span>
</div> </div>
</div> </div>
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<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">bioRxiv</a></span></div> target="_blank">bioRxiv</a></span></div>
<div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div> <div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145843"
target="_blank">Human Normal Prostate GEO: GSEXXX</a></span></div> target="_blank">Human Normal Prostate GEO: GSE145843</a></span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145838"
target="_blank">Human Glandular BPH Prostate GEO: GSEXXX</a></span></div> target="_blank">Human Glandular BPH Prostate GEO: GSE145838</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBT" target="_blank">Normal Human Prostate GUDMAP: <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBT"
16-WPBT</a></span></div> target="_blank">Normal Human Prostate GUDMAP: 16-WPBT</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW" target="_blank">Glandular BPH Human Prostate GUDMAP: <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW"
16-WPBW</a></span></div> target="_blank">Glandular BPH Human Prostate GUDMAP: 16-WPBW</a></span></div>
</div> </div>
</div> </div>
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layouts/custom/mu.PrUr.html
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<div> <div>
<span style="font-size:16px; font-weight:bold;">Experimental details:</span> <span style="font-size:16px; font-weight:bold;">Experimental details:</span>
<br> <br>
<span style="font-size:16px;"> <span style="font-size:16px;"> Single Cell RNA-Sequencing was conducted on C57BL/6 mouse prostates and
Single Cell RNA-Sequencing was conducted on C57BL/6 mouse prostates and urethra. The cells were urethra. The cells were clustered and identified by correlation of their transcriptomes to known cell
clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can types. Gene expression can be compared by population identity, cell lineage, or tissue source. </span>
be compared by population identity, cell lineage, or tissue source.
</span>
</div> </div>
</div> </div>
<div align="center"> <div align="center">
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<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">bioRxiv</a></span></div> target="_blank">bioRxiv</a></span></div>
<div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div> <div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145861"
target="_blank">Mouse Prostate GEO: GSEXXX</a></span></div> target="_blank">Mouse Prostate GEO: GSE145861</a></span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145865"
target="_blank">Mouse Urethra GEO: GSEXXX</a></span></div> target="_blank">Mouse Urethra GEO: GSE145865</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC0" target="_blank">Normal Human Prostate GUDMAP: <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC0"
16-WPC0</a></span></div> target="_blank">Mouse Prostate GUDMAP: 16-WPC0</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC2" target="_blank">Glandular BPH Human Prostate GUDMAP: <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC2"
16-WPC2</a></span></div> target="_blank">Mouse Urethra GUDMAP: 16-WPC2</a></span></div>
</div> </div>
</div> </div>
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