diff --git a/layouts/custom/hu.Pd.deep.html b/layouts/custom/hu.Pd.deep.html index 33ed97dea7293db3c786c3cef03f29997df080d2..61d84d0586e3549cfa1f68834f239d3a1dc197de 100644 --- a/layouts/custom/hu.Pd.deep.html +++ b/layouts/custom/hu.Pd.deep.html @@ -100,11 +100,11 @@ <span style="font-size:16px; font-weight:bold;">Experimental details:</span> <br> <span style="font-size:16px;"> - Single Cell RNA-Sequencing was conducted on 32,194 cells from peripheral zone and transition zone from - the prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were - clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can - be compared by population identity, cell lineage, patient, or dissected prostatic zone. This data is the - result of additional sequencing done on the same samples post publication, and projected in UMAP space. + Single Cell RNA-Sequencing was conducted on cells from peripheral zone and transition zone from the + prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were clustered + and identified by correlation of their transcriptomes to known cell types. Gene expression can be + compared by population identity, cell lineage, dissected prostatic region. This data is the result of + additional sequencing done on the same samples post publication, and projected in UMAP space. </span> </div> </div> @@ -143,10 +143,13 @@ <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=30566875" target="_blank">Cell Reports</a></span></div> <div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div> + <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145843" + target="_blank">Deeper Sequencing GEO: GSE145843</a></span></div> + <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW" + target="_blank">Deeper Sequencing GUDMAP: 16-WPBW</a></span></div> <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117403" - target="_blank">GEO: - GSE117403</a></span></div> - <div><span style="font-size:16px;"><a href="https://doi.org/10.25548/W-R8CM" target="_blank">GUDMAP: + target="_blank">Original GEO: GSE117403</a></span></div> + <div><span style="font-size:16px;"><a href="https://doi.org/10.25548/W-R8CM" target="_blank">Original GUDMAP: W-R8CM</a></span></div> </div> </div> diff --git a/layouts/custom/hu.PdPgb.html b/layouts/custom/hu.PdPgb.html index db6bb5c72f497bcd3f1ed3aaa0cea113c1e81c91..6bdd00abff7a83b3d73bdb868189e17b5748b13d 100644 --- a/layouts/custom/hu.PdPgb.html +++ b/layouts/custom/hu.PdPgb.html @@ -103,11 +103,10 @@ <span style="font-size:16px; font-weight:bold;">Experimental details:</span> <br> <span style="font-size:16px;"> - Single Cell RNA-Sequencing was conducted on 32,194 cells from peripheral zone and transition zone from - the prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were - clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can - be compared by population identity, cell lineage, patient, or dissected prostatic zone. This data is the - result of additional sequencing done on the same samples post publication, and projected in UMAP space. + Single Cell RNA-Sequencing was conducted on cells from normal and BPH diseased prostates using the 10x + Genomics platform. The cells were clustered and identified by correlation of their transcriptomes to + known cell types. Gene expression can be compared by population identity, cell lineage, dissected + prostatic region, and disease phenotype. </span> </div> </div> @@ -146,14 +145,14 @@ <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" target="_blank">bioRxiv</a></span></div> <div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div> - <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" - target="_blank">Human Normal Prostate GEO: GSEXXX</a></span></div> - <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" - target="_blank">Human Glandular BPH Prostate GEO: GSEXXX</a></span></div> - <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBT" target="_blank">Normal Human Prostate GUDMAP: - 16-WPBT</a></span></div> - <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW" target="_blank">Glandular BPH Human Prostate GUDMAP: - 16-WPBW</a></span></div> + <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145843" + target="_blank">Human Normal Prostate GEO: GSE145843</a></span></div> + <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145838" + target="_blank">Human Glandular BPH Prostate GEO: GSE145838</a></span></div> + <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBT" + target="_blank">Normal Human Prostate GUDMAP: 16-WPBT</a></span></div> + <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW" + target="_blank">Glandular BPH Human Prostate GUDMAP: 16-WPBW</a></span></div> </div> </div> diff --git a/layouts/custom/mu.PrUr.html b/layouts/custom/mu.PrUr.html index 64807222ad4cb7a7580d9398bf71c78b0b835d99..681324340032085bb3c9c2fc9c9a76fc4560548c 100644 --- a/layouts/custom/mu.PrUr.html +++ b/layouts/custom/mu.PrUr.html @@ -99,11 +99,9 @@ <div> <span style="font-size:16px; font-weight:bold;">Experimental details:</span> <br> - <span style="font-size:16px;"> - Single Cell RNA-Sequencing was conducted on C57BL/6 mouse prostates and urethra. The cells were - clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can - be compared by population identity, cell lineage, or tissue source. - </span> + <span style="font-size:16px;"> Single Cell RNA-Sequencing was conducted on C57BL/6 mouse prostates and + urethra. The cells were clustered and identified by correlation of their transcriptomes to known cell + types. Gene expression can be compared by population identity, cell lineage, or tissue source. </span> </div> </div> <div align="center"> @@ -141,14 +139,14 @@ <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" target="_blank">bioRxiv</a></span></div> <div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div> - <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" - target="_blank">Mouse Prostate GEO: GSEXXX</a></span></div> - <div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615" - target="_blank">Mouse Urethra GEO: GSEXXX</a></span></div> - <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC0" target="_blank">Normal Human Prostate GUDMAP: - 16-WPC0</a></span></div> - <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC2" target="_blank">Glandular BPH Human Prostate GUDMAP: - 16-WPC2</a></span></div> + <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145861" + target="_blank">Mouse Prostate GEO: GSE145861</a></span></div> + <div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145865" + target="_blank">Mouse Urethra GEO: GSE145865</a></span></div> + <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC0" + target="_blank">Mouse Prostate GUDMAP: 16-WPC0</a></span></div> + <div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC2" + target="_blank">Mouse Urethra GUDMAP: 16-WPC2</a></span></div> </div> </div>