rootdir bugfix

vizapp/build_and_push.sh

-#!/bin/bash
-
-PACKAGE="shiny"
-VERSION="1.0.0"
-CONTAINER_TAG="${PACKAGE}:${VERSION}"
-CONTAINER_NAME="git.biohpc.swmed.edu:5050/astrocyte/workflows/bicf/tcga_shiny/${CONTAINER_TAG}"
-
-# build with proxy settingsdocker 
-docker build -f Dockerfile -t ${CONTAINER_NAME} . &> build_and_push.${VERSION}.log
-
-# docker login
-# Please create your person "Acess token" and config the "~/.docker/config.json" to login automatically
-docker login git.biohpc.swmed.edu:5050
-
-# # Tag and push
-docker push ${CONTAINER_NAME}

vizapp/shinyapp/global.R

@@ -15,7 +15,7 @@ files <- list.files(rootdir,pattern="\\.rdata$",ignore.case=TRUE)
 
 	#message('###################################################################')
 	#message('Analysis started ...')
-	inputFile=paste0("./data/",files)
+	inputFile=paste0(rootdir,files)
 	#odaObj=createODAObject(inputFile)
 	load(inputFile)
 	wbObj=createWBObject(odaObj$parameters)