@@ -12,7 +12,7 @@ This is an R program to visualize and analyze -omics data such as those from met
...
@@ -12,7 +12,7 @@ This is an R program to visualize and analyze -omics data such as those from met
## How to run this tool:
## How to run this tool:
**Step 1:** Click on the [download](https://cloud.biohpc.swmed.edu/index.php/s/nnq28yDTPwKFTNM) link (password: ODA@CRI_UTSW) to download a copy of the ODA tool. Downloading is NOT necessary for CRI users. The files are shared at /archive/CRI/shared/Tools/zzy/ODA on BioHPC.
**Step 1:** Click on the [download](https://cloud.biohpc.swmed.edu/index.php/s/nnq28yDTPwKFTNM) link (password: ODA@CRI_UTSW) to download a copy of the ODA tool. Downloading is NOT necessary for CRI users. The files are shared at /archive/CRI/shared/Tools/zzy/ODA/Vx.y on BioHPC.
**Step 2:** Copy the data template file from your ODA directory, save it in your analysis folder, and open it in Excel. Read the instructions in there. This is your ***input file***.
**Step 2:** Copy the data template file from your ODA directory, save it in your analysis folder, and open it in Excel. Read the instructions in there. This is your ***input file***.
...
@@ -26,7 +26,7 @@ This is an R program to visualize and analyze -omics data such as those from met
...
@@ -26,7 +26,7 @@ This is an R program to visualize and analyze -omics data such as those from met
```
```
sh /path_to_the_program/oda_analysis.sh /input_path/your_data_file.xlsx /output_path/ optional_BioHPC_queue_name
sh /path_to_the_program/oda_analysis.sh /input_path/your_data_file.xlsx /output_path/ optional_BioHPC_queue_name
or
or
sh /archive/CRI/shared/Tools/zzy/ODA/oda_analysis.sh /input_path/your_data_file.xlsx /output_path/ optional_BioHPC_queue_name #For CRI users only.
sh /archive/CRI/shared/Tools/zzy/ODA/Vx.y/oda_analysis.sh /input_path/your_data_file.xlsx /output_path/ optional_BioHPC_queue_name #For CRI users only.
```
```
2. Running on your local machine with a Singularity / Docker / Podman container. Make sure Singularity / Docker / Podman is installed and you can run it from a command line tool such as a Linux terminal or Windows CMD / PowerShell. If you do not use Singularity, you should request a copy of the corresponding Docker / Podman container from me.
2. Running on your local machine with a Singularity / Docker / Podman container. Make sure Singularity / Docker / Podman is installed and you can run it from a command line tool such as a Linux terminal or Windows CMD / PowerShell. If you do not use Singularity, you should request a copy of the corresponding Docker / Podman container from me.
