diff --git a/README.md b/README.md index 700e0ddaaf7a5e801efe41a3fd9944a2b8ce54d2..dbf42be0fab080ed31db356c903e2ebad900c751 100755 --- a/README.md +++ b/README.md @@ -12,7 +12,7 @@ This is an R program to visualize and analyze -omics data such as those from met ## How to run this tool: -**Step 1:** Click on the [download](https://cloud.biohpc.swmed.edu/index.php/s/nnq28yDTPwKFTNM) link (password: ODA@CRI_UTSW) to download a copy of the ODA tool. Downloading is NOT necessary for CRI users. The files are shared at /archive/CRI/shared/Tools/zzy/ODA on BioHPC. +**Step 1:** Click on the [download](https://cloud.biohpc.swmed.edu/index.php/s/nnq28yDTPwKFTNM) link (password: ODA@CRI_UTSW) to download a copy of the ODA tool. Downloading is NOT necessary for CRI users. The files are shared at /archive/CRI/shared/Tools/zzy/ODA/Vx.y on BioHPC. **Step 2:** Copy the data template file from your ODA directory, save it in your analysis folder, and open it in Excel. Read the instructions in there. This is your ***input file***. @@ -26,7 +26,7 @@ This is an R program to visualize and analyze -omics data such as those from met ``` sh /path_to_the_program/oda_analysis.sh /input_path/your_data_file.xlsx /output_path/ optional_BioHPC_queue_name or -sh /archive/CRI/shared/Tools/zzy/ODA/oda_analysis.sh /input_path/your_data_file.xlsx /output_path/ optional_BioHPC_queue_name #For CRI users only. +sh /archive/CRI/shared/Tools/zzy/ODA/Vx.y/oda_analysis.sh /input_path/your_data_file.xlsx /output_path/ optional_BioHPC_queue_name #For CRI users only. ``` 2. Running on your local machine with a Singularity / Docker / Podman container. Make sure Singularity / Docker / Podman is installed and you can run it from a command line tool such as a Linux terminal or Windows CMD / PowerShell. If you do not use Singularity, you should request a copy of the corresponding Docker / Podman container from me. ```