Commits · master · BICF / Astrocyte / sra_pipeline

25 Nov, 2020 2 commits
- Merge branch 'patch-1' into 'master' · f717c458
  Venkat Malladi authored Nov 25, 2020
```
Update README.md

Closes #28

See merge request !64
```
  f717c458
- Update README.md · 0e35826d
  Jeremy Mathews authored Nov 25, 2020
  
  0e35826d
24 Nov, 2020 1 commit
- Update README.md · b39f2535
  Jeremy Mathews authored Nov 24, 2020
  
  b39f2535
15 Aug, 2020 1 commit
- Merge branch '23-update-doi-in-readme' into 'master' · f41be845
  Venkat Malladi authored Aug 15, 2020
```
"Update doi in Readme"

Closes #23

See merge request !62
```
  f41be845
17 Jun, 2020 11 commits
- Update changelog. · a90559e1
  Venkat Malladi authored Jun 17, 2020
  
  a90559e1
- Add in CPRIT name. · 00a86e61
  Venkat Malladi authored Jun 17, 2020
  
  00a86e61
- Fix naming. · 649434b2
  Venkat Malladi authored Jun 17, 2020
  
  649434b2
- Updated to generic doi · bf23798d
  Venkat Malladi authored Jun 17, 2020
  
  bf23798d
- Merge branch 'patch-2' into 'master' · 2a44b141
  Jonathan Gesell authored Jun 17, 2020
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Patch 2

See merge request !61
```
  2a44b141
- Update CHANGELOG.md · 1e5c36e5
  Jonathan Gesell authored Jun 17, 2020
  
  1e5c36e5
- Update CHANGELOG.md with new v1.1.0 change information. · ed8984ce
  Jonathan Gesell authored Jun 17, 2020
  
  ed8984ce
- Merge branch '21-add-badges' into 'master' · e59ac99e
  Jonathan Gesell authored Jun 17, 2020
```
Resolve "Add testing badges"

Closes #21

See merge request !59
```
  e59ac99e
- Add merge request template. · 118e42dc
  Venkat Malladi authored Jun 17, 2020
  
  118e42dc
- Add testing badge · 4a611ec0
  Venkat Malladi authored Jun 17, 2020
  
  4a611ec0
- Merge branch '14-UpdateTests' into 'master' · 191de8a9
  Venkat Malladi authored Jun 17, 2020
```
Resolve "updateUnitTests"

Closes #14

See merge request !58
```
  191de8a9
16 Jun, 2020 2 commits
- Corrected missing test in workflow/tests/test_download_sras_single.py · 83b1910b
  Jonathan Gesell authored Jun 16, 2020
  
  83b1910b
- Corrected zip file internal path error for PE test · 69bed41e
  Jonathan Gesell authored Jun 16, 2020
  
  69bed41e
15 Jun, 2020 1 commit
- Updated integration testing. · 3776c59c
  Jonathan Gesell authored Jun 15, 2020
  
  3776c59c
12 Jun, 2020 4 commits
- Corrected file path in MultiQC report test · 0881d14c
  Jonathan Gesell authored Jun 12, 2020
  
  0881d14c
- Corrected typo in multiQC integration test · 41d0d4d7
  Jonathan Gesell authored Jun 12, 2020
  
  41d0d4d7
- Changed manner of fastqc test. · c1b0fd9f
  Jonathan Gesell authored Jun 12, 2020
  
  c1b0fd9f
- Updated the workflow/tests/test_integration_consistency.py to correct for... · 5edf31bb
  Jonathan Gesell authored Jun 12, 2020
```
Updated the workflow/tests/test_integration_consistency.py to correct for string error and streamline.
```
  5edf31bb
11 Jun, 2020 5 commits
- Corrected typo in workflow/tests/test_integration_consistency.py · 11758499
  Jonathan Gesell authored Jun 11, 2020
  
  11758499
- Corrected typo in workflow/tests/test_integration_consistency.py · 8ed5cd8a
  Jonathan Gesell authored Jun 11, 2020
  
  8ed5cd8a
- Corrected typo in workflow/tests/test_integration_consistency.py · c873ae91
  Jonathan Gesell authored Jun 11, 2020
  
  c873ae91
- Added tests for fastqc and multiqc tests. · bb582bf7
  Jonathan Gesell authored Jun 11, 2020
  
  bb582bf7
- Trying new test for fastqc consistency. · 1ca41b1c
  Jonathan Gesell authored Jun 11, 2020
  
  1ca41b1c
10 Jun, 2020 5 commits
- Corrected typo in workflow/tests/test_integration_consistency.py · b956f7ab
  Jonathan Gesell authored Jun 10, 2020
  
  b956f7ab
- Updated .gilab-ci.yml, and changed test names in integration tests. · c30a6b7f
  Jonathan Gesell authored Jun 10, 2020
  
  c30a6b7f
- Added consistency tests to the integration test. · 8864e908
  Jonathan Gesell authored Jun 10, 2020
  
  8864e908
- Added sorting function to workflow/scripts/downloadSRA.sh to improve testing and functionality. · c3288e38
  Jonathan Gesell authored Jun 10, 2020
  
  c3288e38
- Made download_sras_single.py more robust. Corrected path to design file for integration test. · c5bc302e
  Jonathan Gesell authored Jun 10, 2020
  
  c5bc302e
09 Jun, 2020 8 commits
- Updated download tests to keep error files consistent · 357a30dd
  Jonathan Gesell authored Jun 09, 2020
  
  357a30dd
- Generalized download tests. · f50320e8
  Jonathan Gesell authored Jun 09, 2020
  
  f50320e8
- Updated multiQC test. · ce6eb583
  Jonathan Gesell authored Jun 09, 2020
  
  ce6eb583
- Updated workflow/tests/test_download_sras_fail.py · cf5ecc1e
  Jonathan Gesell authored Jun 09, 2020
  
  cf5ecc1e
- Corrected line for failure test. · c11347a1
  Jonathan Gesell authored Jun 09, 2020
  
  c11347a1
- Corrected reading of file in workflow/tests/test_download_sras_fail.py · 372c2596
  Jonathan Gesell authored Jun 09, 2020
  
  372c2596
- Changed how to test reading in the rror logs · da2248d7
  Jonathan Gesell authored Jun 09, 2020
  
  da2248d7
- Merge branch '14-UpdateTests' of... · c674a438
  Jonathan Gesell authored Jun 09, 2020
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Merge branch '14-UpdateTests' of git.biohpc.swmed.edu:BICF/Astrocyte/sra_pipeline into 14-UpdateTests
```
  c674a438