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Commit f717c458 authored by Venkat Malladi's avatar Venkat Malladi
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Merge branch 'patch-1' into 'master'

Update README.md

Closes #28

See merge request !64
parents f41be845 0e35826d
Branches master
1 merge request!64Update README.md
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...@@ -36,7 +36,7 @@ Please note that while this program is designed to handle multiple SRA, SRR, SRS ...@@ -36,7 +36,7 @@ Please note that while this program is designed to handle multiple SRA, SRR, SRS
## Running the Pipeline ## Running the Pipeline
To download the latest version of the pipeline: To download the latest version of the pipeline:
```bash ```bash
git clone git@git.biohpc.swmed.edu:BICF/Astrocyte/metagenome_analysis.git git clone git@git.biohpc.swmed.edu:BICF/Astrocyte/sra_pipeline.git
``` ```
The pipeline was designed to run with Nextflow 0.31.0, however, it should be compatable with any version of Nextflow post 0.30.0. The pipeline was designed to run with Nextflow 0.31.0, however, it should be compatable with any version of Nextflow post 0.30.0.
Additionally, we use [Singularity](https://sylabs.io) version 3.0.2, however, all containers were built using Docker. At this time, there is no minimum version requirement for either of these programs, however, we recommend at least version 3.0.0 of Singularity and [Docker version 19.0.0](https://docs.docker.com/install). Additionally, we use [Singularity](https://sylabs.io) version 3.0.2, however, all containers were built using Docker. At this time, there is no minimum version requirement for either of these programs, however, we recommend at least version 3.0.0 of Singularity and [Docker version 19.0.0](https://docs.docker.com/install).
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