Commits · d01043a30605923414db3c6fbcbccc2f08eaa5b4 · BICF / Astrocyte / rnaseq

Mar 02, 2022
- Escape slash for groove · d01043a3
  Peng Lian authored 3 years ago
  
  d01043a3
- Update container version · 8e333198
  Peng Lian authored 3 years ago
  
  8e333198
- Bugfix for permission issue · 978710b7
  Peng Lian authored 3 years ago
  
  978710b7
- Update container structuralvariant · a76d224b
  Peng Lian authored 3 years ago
  
  a76d224b
- Update Singularity · 11770d6d
  Peng Lian authored 3 years ago
  
  11770d6d
- Enable containers · bdf493c8
  Peng Lian authored 3 years ago
  
  bdf493c8
- Fix bug, is empty · c42cd0ff
  Peng Lian authored 3 years ago
  
  c42cd0ff
- Add support for Astrocyte · 4c4442d9
  Peng Lian authored 3 years ago
  
  4c4442d9
Feb 22, 2022
- Change submodule strategy to not clone miscscripts in process_scripts · 061b09bf
  Peng Lian authored 3 years ago
  
  061b09bf
- Add submodule of process_scripts · 9afe656e
  Peng Lian authored 3 years ago
  
  9afe656e
Jun 04, 2021
- Update README.md -- design files misrepresented · e6516dc5
  Brandi Cantarel authored 3 years ago
  
  e6516dc5
May 24, 2021
- update testing · 6417cd7b
  Brandi Cantarel authored 3 years ago
  
  6417cd7b
May 20, 2021
- Merge branch 'singularity' into 'master' · f21d0604
  Brandi Cantarel authored 3 years ago
```
Singularity

See merge request !10
```
  publish_2.0.0
  
  f21d0604
- Removed submodule · c19cb854
  Brandi Cantarel authored 3 years ago
  
  c19cb854
- no need for process_scripts removing submodule · 2b87671a
  Brandi Cantarel authored 3 years ago
  
  2b87671a
- Merge branch 'singularity' of git.biohpc.swmed.edu:BICF/Astrocyte/rnaseq into singularity · bf87d199
  Brandi Cantarel authored 3 years ago
  
  bf87d199
- update README and config · b5e2828c
  Brandi Cantarel authored 3 years ago
  
  b5e2828c
May 17, 2021
- Fix syntaxt for mouse config. · 2a49ed98
  Venkat Malladi authored 3 years ago
  
  2a49ed98
- Change the modules path to be relative. · 1b616617
  Venkat Malladi authored 3 years ago
  
  1b616617
- Change the submodule strategy. · 720ce976
  Venkat Malladi authored 3 years ago
  
  720ce976
- Fix CI to include config. · 32707e26
  Venkat Malladi authored 3 years ago
  
  32707e26
- Change chachedir syntax. · 4fd9dec2
  Venkat Malladi authored 3 years ago
  
  4fd9dec2
- testing singularity · b58a2175
  Brandi Cantarel authored 3 years ago
  
  b58a2175
Oct 05, 2020
- update main for singularity stat analysis · 6d3d64fe
  Brandi Cantarel authored 4 years ago
  
  publish_1.0.0
  
  6d3d64fe
Oct 01, 2020
- update with singularity · 9131c8e0
  Brandi Cantarel authored 4 years ago
  
  9131c8e0
Sep 08, 2020
- update for singularity · 5288e775
  Brandi Cantarel authored 4 years ago
  
  5288e775
Aug 31, 2020
- update pe/se trim/rna_align · 2d53d37c
  Brandi Cantarel authored 4 years ago
  
  publish_0.5.15
  
  2d53d37c
Jul 20, 2020
- update trim for se · 36711f28
  Brandi Cantarel authored 4 years ago
  
  36711f28
Jun 26, 2020
- change url to git@ modules · ff1544dd
  Brandi Cantarel authored 4 years ago
  
  publish_0.5.14
  
  ff1544dd
May 22, 2020
- update genect_rnaseq/statanal.sh · fa94e3bb
  Brandi Cantarel authored 4 years ago
  
  publish_0.5.13
  
  fa94e3bb
- update process_scripts · e61e9861
  Brandi Cantarel authored 4 years ago
  
  e61e9861
Apr 09, 2020
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/rnaseq · 1ac0c0fc
  Brandi Cantarel authored 4 years ago
  
  1ac0c0fc
- update from clinseq;move submodule · 1968a2e5
  Brandi Cantarel authored 4 years ago
  
  1968a2e5
Jan 07, 2020
- Merge branch '19-astrocyte_doc' into 'master' · aac993e7
  Venkat Malladi authored 5 years ago
```
Fix documentationn for choosing only fastq files.

Closes #19

See merge request !9
```
  aac993e7
- Fix documentationn for choosing only fastq files. · 2e1df269
  Venkat Malladi authored 5 years ago
  
  2e1df269
Oct 21, 2019
- update stringtie · b2fdf539
  Brandi Cantarel authored 5 years ago
  
  publish_0.5.12
  
  b2fdf539
Aug 28, 2019
- Merge branch '18-ErrorStratagy' into 'master' · 75e3b284
  Venkat Malladi authored 5 years ago
```
add in error strategy

Closes #18

See merge request !8
```
  75e3b284
Aug 27, 2019
- add in error strategy · 7ff15f77
  Jeremy Mathews authored 5 years ago
  
  7ff15f77
Jul 08, 2019
- Merge branch '15-CheckInputFiles' into 'master' · 7c2ae90f
  Brandi Cantarel authored 5 years ago
```
Resolve "Check file inputs"

Closes #15 and #16

See merge request !7
```
  7c2ae90f
Jun 27, 2019
- Change path for geneset mouse in gitlab-ci.yml file · 888e1ee4
  Jeremy Mathews authored 5 years ago
  
  888e1ee4