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Commit 888e1ee4 authored by Jeremy Mathews's avatar Jeremy Mathews
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Change path for geneset mouse in gitlab-ci.yml file

parent 468ff7a8
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1 merge request!7Resolve "Check file inputs"
Pipeline #4182 passed with stage
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......@@ -19,6 +19,6 @@ test_human:
test_mouse:
stage: integration
script:
- nextflow run -with-dag flowchart.png -with-timeline mouse_timeline.html -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups null --output mouse_output
- nextflow run -with-dag flowchart.png -with-timeline mouse_timeline.html -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/mouse/GRCm38 --markdups null --output mouse_output
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