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BICF
Astrocyte
rnaseq
Commits
f1e9fed0
Commit
f1e9fed0
authored
Mar 19, 2018
by
Brandi Cantarel
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update ci
parent
c997ca38
Pipeline
#1675
failed with stage
in 164 minutes and 43 seconds
Changes
2
Pipelines
1
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2 changed files
with
2 additions
and
4 deletions
+2
-4
.gitlab-ci.yml
.gitlab-ci.yml
+2
-2
nextflow.config
nextflow.config
+0
-2
No files found.
.gitlab-ci.yml
View file @
f1e9fed0
...
...
@@ -15,13 +15,13 @@ stages:
test_human
:
stage
:
integration
script
:
-
nextflow run -with-report human_report.html workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
-
nextflow run -with-
dag flowchart.png -with-timeline human_timeline.html -with-
report human_report.html workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
artifacts
:
expire_in
:
2 days
test_mouse
:
stage
:
integration
script
:
-
nextflow run -with-
report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata
/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups
null
--output mouse_output
-
nextflow run -with-
dag flowchart.png -with-timeline mouse_timeline.html -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq
/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups
null
--output mouse_output
artifacts
:
expire_in
:
2 days
nextflow.config
View file @
f1e9fed0
...
...
@@ -4,5 +4,3 @@ process.clusterOptions = '--hold'
trace
.
enabled
=
true
trace
.
file
=
'pipeline_trace.txt'
trace
.
field
=
'task_id,native_id,process,name,status,exit,submit,start,complete,duration,realtime'
report
.
enabled
=
true
report
.
file
=
'report.html'
\ No newline at end of file
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