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BICF
Astrocyte
rnaseq
Commits
c997ca38
Commit
c997ca38
authored
Mar 19, 2018
by
Brandi Cantarel
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adding name report.html
parent
6d090ae3
Pipeline
#1673
failed with stage
in 263 minutes and 48 seconds
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.gitlab-ci.yml
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c997ca38
...
...
@@ -15,13 +15,13 @@ stages:
test_human
:
stage
:
integration
script
:
-
nextflow run workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
-
nextflow run
-with-report human_report.html
workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
artifacts
:
expire_in
:
2 days
test_mouse
:
stage
:
integration
script
:
-
nextflow run workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups
null
--output mouse_output
-
nextflow run
-with-report mouse_report.html
workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups
null
--output mouse_output
artifacts
:
expire_in
:
2 days
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