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rnaseq
Commit c997ca38 authored by Brandi Cantarel's avatar Brandi Cantarel
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adding name report.html

parent 6d090ae3
Pipeline #1673 failed with stage
    in 263 minutes and 48 seconds
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    .gitlab-ci.yml
    View file @ c997ca38
    ......@@ -15,13 +15,13 @@ stages:
    test_human:
    stage: integration
    script:
    - nextflow run workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
    - nextflow run -with-report human_report.html workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
    artifacts:
    expire_in: 2 days
    test_mouse:
    stage: integration
    script:
    - nextflow run workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups null --output mouse_output
    - nextflow run -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups null --output mouse_output
    artifacts:
    expire_in: 2 days
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