Commits · fcbbe7369e0c350f6c1fe4af672471e163eea2e0 · BICF / Astrocyte / chipseq_analysis

Apr 18, 2019
- Fix astrocyte. · fcbbe736
  Venkat Malladi authored 5 years ago
  
  fcbbe736
- Update to be astrocyte compatible. · eb8e3e73
  Venkat Malladi authored 5 years ago
  
  eb8e3e73
Jan 12, 2019
- Fix variables. · 8e9990bd
  Venkat Malladi authored 6 years ago
  
  8e9990bd
- Force biocpackage. · 684ef414
  Venkat Malladi authored 6 years ago
  
  684ef414
Jan 11, 2019
- Add in astrocyte test on default singleend data. · c37ec8eb
  Venkat Malladi authored 6 years ago
  
  c37ec8eb
Nov 02, 2018
- Rever changes. · 7b165eab
  Venkat Malladi authored 6 years ago
  
  7b165eab
Nov 01, 2018
- Fix Beibei's version of pipeline. · c011b6a1
  Venkat Malladi authored 6 years ago
  
  publish_0.0.15
  
  c011b6a1
Jul 25, 2018
- Fix workflow. · 2ede9219
  Venkat Malladi authored 6 years ago
  
  2ede9219
- add in motif search. · 5198436d
  Venkat Malladi authored 6 years ago
  
  5198436d
Jul 24, 2018
- Update annotation script. · 7deea97e
  Venkat Malladi authored 6 years ago
  
  7deea97e
Nov 14, 2017
- Add in call peaks step and configurations. · 96e6d832
  Venkat Malladi authored 7 years ago
  
  96e6d832
Oct 17, 2017
- Add in deeptools code to generate QC from deeptools. · 4e68354e
  Venkat Malladi authored 7 years ago
  
  4e68354e
Oct 10, 2017
- Update samtools version and synxtax to fix bugs in last push. · 2948ddca
  Venkat Malladi authored 7 years ago
  
  2948ddca
Oct 09, 2017
- Add in steps to remove dups and filter reads. · 3a9a868b
  Venkat Malladi authored 7 years ago
  
  3a9a868b
Oct 07, 2017
- Fix version of bwa · d8c5f740
  Venkat Malladi authored 7 years ago
  
  d8c5f740
Oct 06, 2017
- Fix astrocyte_pkg.yml · 2bd72c5d
  Venkat Malladi authored 7 years ago
  
  2bd72c5d
Oct 05, 2017
- Add in maping step with apporpriate configurations. · 14299993
  Venkat Malladi authored 7 years ago
  
  14299993
Oct 03, 2017
- Add in trimming step into workflow. · f3c034a7
  Venkat Malladi authored 7 years ago
  
  f3c034a7
Sep 13, 2017
- Add gitlab-ci test configuration and update testing. · 5f7f3d0f
  Venkat Malladi authored 7 years ago
  
  5f7f3d0f
- Add in test data and updated scripts. · db1c9133
  Venkat Malladi authored 7 years ago
  
  db1c9133
Sep 12, 2017
- First test at using fastqc. · ad1a4aa5
  Venkat Malladi authored 7 years ago
  
  ad1a4aa5
Apr 26, 2017
- update yaml · 480f260b
  Beibei Chen authored 7 years ago
  
  480f260b
- update yaml · 37906e07
  Beibei Chen authored 7 years ago
  
  37906e07
- modify runMEME and set default for toppeak · 144bd3f4
  Beibei Chen authored 7 years ago
  
  publish_0.0.11
  
  144bd3f4
Apr 25, 2017
- Add regex · 7dc50dc1
  Beibei Chen authored 7 years ago
  
  publish_0.0.10
  
  7dc50dc1
Apr 21, 2017
- Update the yml file · f6af50dc
  Beibei Chen authored 7 years ago
  
  f6af50dc
Mar 15, 2017
- update form · c3be6be2
  Beibei Chen authored 8 years ago
  
  c3be6be2
- update xml file · d9e37be2
  Beibei Chen authored 8 years ago
  
  d9e37be2
Mar 03, 2017
- add pkg · 352b01d5
  Beibei Chen authored 8 years ago
  
  publish_0.0.2
  
  352b01d5