Commits · ae9e6c7558a4d17888028913c6e784d906cae93b · BICF / Astrocyte / chipseq_analysis

Oct 27, 2017
- Fix pseudoreplication to be only 2 replicates. · ae9e6c75
  Venkat Malladi authored 7 years ago
  
  ae9e6c75
- Fix passing of experiment id. · 3ba985c6
  Venkat Malladi authored 7 years ago
  
  3ba985c6
- Make process not local. · 3b05c7c2
  Venkat Malladi authored 7 years ago
  
  3b05c7c2
- Fix syntax. · 6f938782
  Venkat Malladi authored 7 years ago
  
  6f938782
- Add in pooling and psuedoreplicate scripts and tests. · 32e90024
  Venkat Malladi authored 7 years ago
  
  32e90024
Oct 26, 2017
- Refactor code to have consistent use of arguments and referenceing pandas. · 249284b7
  Venkat Malladi authored 7 years ago
  
  249284b7
Oct 25, 2017
- Fix syntax of get_args across all scripts. · 648dc44d
  Venkat Malladi authored 7 years ago
  
  648dc44d
- Add in os library. · 93ddd8a2
  Venkat Malladi authored 7 years ago
  
  93ddd8a2
- Fix typ in file. · 87996cff
  Venkat Malladi authored 7 years ago
  
  87996cff
- Add in making experiment design files. · 3d6faead
  Venkat Malladi authored 7 years ago
  
  3d6faead
Oct 24, 2017
- Merge branch '5-phantompeakcalls' into 'master' · 17b7de97
  Venkat Malladi authored 7 years ago
```
Resolve "Include Phantompeakqualtools step"

Closes #5

See merge request !11
```
  17b7de97
- Fix test fil.e · 48fa7dbb
  Venkat Malladi authored 7 years ago
  
  48fa7dbb
- Update test with correct comparison syntax. · 9c6f11a1
  Venkat Malladi authored 7 years ago
  
  9c6f11a1
- Fix output. · 79526d57
  Venkat Malladi authored 7 years ago
  
  79526d57
- Fix options. · f545947d
  Venkat Malladi authored 7 years ago
  
  f545947d
- Fix reference to file. · 6bc954e9
  Venkat Malladi authored 7 years ago
  
  6bc954e9
Oct 23, 2017
- Fix typo in outputs. · 6ae71bba
  Venkat Malladi authored 7 years ago
  
  6ae71bba
- Add in xcor step and qc values. · b5d90522
  Venkat Malladi authored 7 years ago
  
  b5d90522
- fix typo in file name during test. · 853c4d18
  Venkat Malladi authored 7 years ago
  
  853c4d18
- remove phantompeakqualtools. · ac462596
  Venkat Malladi authored 7 years ago
  
  ac462596
- Merge branch 'master' into 5-phantompeakcalls · 66e6c5cc
  Venkat Malladi authored 7 years ago
  
  66e6c5cc
- Fix output file name. · ea889a62
  Venkat Malladi authored 7 years ago
  
  ea889a62
- Merge branch 'master' into 5-phantompeakcalls · f73ab7b0
  Venkat Malladi authored 7 years ago
  
  f73ab7b0
- Fix output copu. · 5435d541
  Venkat Malladi authored 7 years ago
  
  5435d541
- Update help. · a769626f
  Venkat Malladi authored 7 years ago
  
  a769626f
- Merge branch 'master' into 5-phantompeakcalls · 35210747
  Venkat Malladi authored 7 years ago
  
  35210747
- Add in tmp directory. · 50a51530
  Venkat Malladi authored 7 years ago
  
  50a51530
- Add in submodule phantompeakqualtools · 80054351
  Venkat Malladi authored 7 years ago
  
  80054351
- Merge branch '12-tagAlign' into 'master' · ba3af111
  Venkat Malladi authored 7 years ago
```
Resolve "Make tagAlign files"

Closes #12

See merge request !10
```
  ba3af111
Oct 22, 2017
- update config to not have local step. · b801983f
  Venkat Malladi authored 7 years ago
  
  b801983f
- Fix passing of bedpe reads. · 17fd164c
  Venkat Malladi authored 7 years ago
  
  17fd164c
- update output of convertReads. · 938c75fd
  Venkat Malladi authored 7 years ago
  
  938c75fd
- Convert bam to tagAlign. · 4c00f7ea
  Venkat Malladi authored 7 years ago
  
  4c00f7ea
Oct 20, 2017
- Fix syntax of process name. · bdf276ec
  Venkat Malladi authored 7 years ago
  
  bdf276ec
Oct 18, 2017
- Merge branch '11-remove-fastqc' into 'master' · bc57f830
  Venkat Malladi authored 7 years ago
```
Remove fastqc step.

Closes #11

See merge request !9
```
  bc57f830
- Remove fastqc step. · 7a3a2bb0
  Venkat Malladi authored 7 years ago
  
  7a3a2bb0
- Merge branch '6-deeptools' into 'master' · e914ddd5
  Venkat Malladi authored 7 years ago
```
Resolve "Update deeptools"

Closes #6

See merge request !8
```
  e914ddd5
- Fix path to files. · b8c85d1e
  Venkat Malladi authored 7 years ago
  
  b8c85d1e
- Fix varaible name. · c64e9f39
  Venkat Malladi authored 7 years ago
  
  c64e9f39
- Fix missing variable. · 60ff5559
  Venkat Malladi authored 7 years ago
  
  60ff5559