Commits · 52e27a313a75afa56adbead0bcfb209b714f20b1 · BICF / Astrocyte / chipseq_analysis

Jan 07, 2019
- fix merge. · 52e27a31
  Venkat Malladi authored 6 years ago
  
  52e27a31
- Update staging to be unit, single and multiple. · 9b00fd0b
  Venkat Malladi authored 6 years ago
  
  9b00fd0b
- Fix paired-end tests. · 3631108c
  Venkat Malladi authored 6 years ago
  
  3631108c
- Merge in changes. · 726b0d01
  Venkat Malladi authored 6 years ago
  
  726b0d01
- Fix what tests are run and the testing output. · 6fddf146
  Venkat Malladi authored 6 years ago
  
  6fddf146
- Remove space. · 123c177c
  Venkat Malladi authored 6 years ago
  
  123c177c
Jan 06, 2019
- Update R script output. · 1f604a6a
  Venkat Malladi authored 6 years ago
  
  1f604a6a
- Fix names in motif search and adding summits files. · db7110cb
  Venkat Malladi authored 6 years ago
  
  db7110cb
- Add summits and remove extra names in files. · e1f7f61b
  Venkat Malladi authored 6 years ago
  
  e1f7f61b
- Shorten and update file names. · fbec8738
  Venkat Malladi authored 6 years ago
  
  fbec8738
- Shorten and update file names. · 7db1f905
  Venkat Malladi authored 6 years ago
  
  7db1f905
- Update cross correlation filenames to be shorter. · 487b307d
  Venkat Malladi authored 6 years ago
  
  487b307d
- Change sample names for convert reads. · f760c6df
  Venkat Malladi authored 6 years ago
  
  f760c6df
- Update file names and output for filter reads. · cf00e0e5
  Venkat Malladi authored 6 years ago
  
  cf00e0e5
- Fix merge of tests. · e57b3605
  Venkat Malladi authored 6 years ago
  
  e57b3605
- verify that output directory doesn't exist. · d6dd0596
  Venkat Malladi authored 6 years ago
  
  d6dd0596
- Fix test options and files that should be moved over. · 3a0ac094
  Venkat Malladi authored 6 years ago
  
  3a0ac094
- fix missing genome params and annotate peaks syntax. · cde5c10a
  Venkat Malladi authored 6 years ago
  
  cde5c10a
- Update mapped reads with sample id. · 4c3add75
  Venkat Malladi authored 6 years ago
  
  4c3add75
- Add test for sample and experiment id conformance. · b1c3fb87
  Venkat Malladi authored 6 years ago
  
  b1c3fb87
- Change fastq's to be new sample names as defined by the sample_id. · cec86acd
  Venkat Malladi authored 6 years ago
  
  cec86acd
- Reslove merge conflicts. · 78b410c7
  Venkat Malladi authored 6 years ago
  
  78b410c7
- Merge branch '22_output_dir' into 'master' · cbc05001
  Venkat Malladi authored 6 years ago
```
Add option for outdir.

See merge request !16
```
  cbc05001
- Update outdir default. · 22db60b0
  Venkat Malladi authored 6 years ago
  
  22db60b0
- Merge branch 'master' into '22_output_dir' · b20526ff
  Venkat Malladi authored 6 years ago
```
# Conflicts:
#   workflow/main.nf
```
  b20526ff
- Merge branch '25_pairedend_QC' into 'master' · b242be87
  Venkat Malladi authored 6 years ago
```
25 pairedend qc

See merge request !15
```
  b242be87
- Remove test code. · ac16a48e
  Venkat Malladi authored 6 years ago
  
  ac16a48e
- Change output of diffPeaks design file. · 83e1537d
  Venkat Malladi authored 6 years ago
  
  83e1537d
Jan 05, 2019
- Add option for outdir. · 6cbc074d
  Venkat Malladi authored 6 years ago
  
  6cbc074d
- Test for new unique experiment determination. · 4a27bcf5
  Venkat Malladi authored 6 years ago
  
  4a27bcf5
- Add in test to see if output exists. · fb1633a3
  Venkat Malladi authored 6 years ago
  
  fb1633a3
- Change to int for fragment length. · 06b65b68
  Venkat Malladi authored 6 years ago
  
  06b65b68
- Change order of process. Made diffPeaks a when opperative. · 92096435
  Venkat Malladi authored 6 years ago
  
  92096435
- Change test lenght of output. · 6b3c190b
  Venkat Malladi authored 6 years ago
  
  6b3c190b
- Add in extension to other functions. · 9d874ea1
  Venkat Malladi authored 6 years ago
  
  9d874ea1
Jan 04, 2019
- Defaulted to zcat instead of unzip file. · de67f536
  Venkat Malladi authored 6 years ago
```
(cherry picked from commit ec737360)
```
  de67f536
- Fix paried-end quality output options. · 74e367c1
  Venkat Malladi authored 6 years ago
  
  74e367c1
- Fix paried-end quality output. · aa505047
  Venkat Malladi authored 6 years ago
  
  aa505047
- remove annotate peak vennpie and update test. · afa3bbee
  Venkat Malladi authored 6 years ago
  
  afa3bbee
- Fix memechip output directoires. · 673c0718
  Venkat Malladi authored 6 years ago
  
  673c0718