Commit 9b00fd0b authored by Venkat Malladi's avatar Venkat Malladi
Browse files

Update staging to be unit, single and multiple.

parent 3631108c
Pipeline #2735 failed
......@@ -6,7 +6,8 @@ before_script:
stages:
- unit
- integration
- single
- multiple
user_configuration:
stage: unit
......@@ -15,7 +16,7 @@ user_configuration:
-pytest -m unit --cov=./workflow/scripts
single_end_mouse:
stage: integration
stage: single
script:
- nextflow run workflow/main.nf -resume
- pytest -m singleend
......@@ -23,7 +24,7 @@ single_end_mouse:
expire_in: 2 days
paired_end_human:
stage: integration
stage: single
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
- pytest -m pairedend
......@@ -31,7 +32,7 @@ paired_end_human:
expire_in: 2 days
single_end_diff:
stage: integration
stage: multiple
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume
- pytest -m singlediff
......@@ -39,7 +40,7 @@ single_end_diff:
expire_in: 2 days
paired_end_diff:
stage: integration
stage: multiple
script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
- pytest -m paireddiff
......
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