Commits · 0205044c94f0956e18a3ac9df07dbf1de5ac2eec · BICF / Astrocyte / chipseq_analysis

Oct 06, 2017
- Add in trace config and fix varaible of map_reads. · 0205044c
  Venkat Malladi authored 7 years ago
  
  0205044c
- Fix file used in first step. · 08898dde
  Venkat Malladi authored 7 years ago
  
  08898dde
- Fix missing libraries and use of python3. · 861b7993
  Venkat Malladi authored 7 years ago
  
  861b7993
Oct 05, 2017
- Rename config file. · 758cf363
  Venkat Malladi authored 7 years ago
  
  758cf363
- Add in maping step with apporpriate configurations. · 14299993
  Venkat Malladi authored 7 years ago
  
  14299993
Oct 04, 2017
- Add in nextflow config for loading modules. · 38f026a1
  Venkat Malladi authored 7 years ago
  
  38f026a1
Oct 03, 2017
- Consistency in documentation. · 932baa0d
  Venkat Malladi authored 7 years ago
  
  932baa0d
- Update trim_reads to extrapolate the params. · 13fe4335
  Venkat Malladi authored 7 years ago
  
  13fe4335
- Update trim command name. · fd33ecb7
  Venkat Malladi authored 7 years ago
  
  fd33ecb7
- Add in trimming step into workflow. · f3c034a7
  Venkat Malladi authored 7 years ago
  
  f3c034a7
- Add in argument for trim_parameters. · 5532fa6d
  Venkat Malladi authored 7 years ago
  
  5532fa6d
- update path variables in logger output · b583f9b0
  Venkat Malladi authored 7 years ago
  
  b583f9b0
- update path variables · 31ffef27
  Venkat Malladi authored 7 years ago
  
  31ffef27
- Fix logger syntax. · 4b135733
  Venkat Malladi authored 7 years ago
  
  4b135733
Oct 01, 2017
- Add triming of reads, remove fastqc step. · 84872f97
  Venkat Malladi authored 7 years ago
  
  84872f97
Sep 30, 2017
- Merge branch '1-fastqc' into 'master' · c9f0a2c4
  Venkat Malladi authored 7 years ago
```
Resolve "Add in Fastqc"

Closes #1

See merge request !4
```
  c9f0a2c4
- Merge branch 'master' into '1-fastqc' · cb70f489
  Venkat Malladi authored 7 years ago
```
# Conflicts:
#   .gitlab-ci.yml
```
  cb70f489
- Add in fastqc step. · 3d73714a
  Venkat Malladi authored 7 years ago
  
  3d73714a
Sep 28, 2017
- Pass nextflow test for design file. · 8ef6e674
  Venkat Malladi authored 7 years ago
  
  8ef6e674
Sep 27, 2017
- Remove directory change. · ee536623
  Venkat Malladi authored 7 years ago
  
  ee536623
- Add information for local library. · eb8f7642
  Venkat Malladi authored 7 years ago
  
  eb8f7642
- Add in pytest-pythonpath. · 46d64cf6
  Venkat Malladi authored 7 years ago
  
  46d64cf6
- Add in dummy gitlab file. · 2728fc7e
  Venkat Malladi authored 7 years ago
  
  2728fc7e
Sep 26, 2017
- Update gitlab ci for pytest. · b3322653
  Venkat Malladi authored 7 years ago
  
  b3322653
- Add in test for design files. · 02bef1b4
  Venkat Malladi authored 7 years ago
  
  02bef1b4
Sep 20, 2017
- update syntax and order of qc_fastq.py · dfed27c2
  Venkat Malladi authored 7 years ago
  
  dfed27c2
Sep 13, 2017
- Add gitlab-ci test configuration and update testing. · 5f7f3d0f
  Venkat Malladi authored 7 years ago
  
  5f7f3d0f
- Add in test data and updated scripts. · db1c9133
  Venkat Malladi authored 7 years ago
  
  db1c9133
Sep 12, 2017
- Update name of task and permission. · 73082a3c
  Venkat Malladi authored 7 years ago
  
  73082a3c
- Update modules. · b5d2122c
  Venkat Malladi authored 7 years ago
  
  b5d2122c
- First test at using fastqc. · ad1a4aa5
  Venkat Malladi authored 7 years ago
  
  ad1a4aa5
Sep 08, 2017
- Remove extra file. · c81ad56c
  Venkat Malladi authored 7 years ago
  
  c81ad56c
- Add in gitignore and remove pyc files · 458ac1f7
  Venkat Malladi authored 7 years ago
  
  458ac1f7
May 09, 2017
- Merge branch 'master' of https://git.biohpc.swmed.edu/BICF/Astrocyte/chipseq_analysis · 9d2ef57e
  Beibei Chen authored 7 years ago
  
  9d2ef57e
- fix chipseeker mm10 · e93f03f2
  Beibei Chen authored 7 years ago
  
  e93f03f2
Apr 26, 2017
- Update index.md · df5504bf
  Beibei Chen authored 7 years ago
  
  publish_0.0.12
  
  df5504bf
- Update index.md · cd932af1
  Beibei Chen authored 7 years ago
  
  cd932af1
- add example · 0f73daf5
  Beibei Chen authored 7 years ago
  
  0f73daf5
- change name · 4f45e9b1
  Beibei Chen authored 7 years ago
  
  4f45e9b1
- Add example design file · 1f03100f
  Beibei Chen authored 7 years ago
  
  1f03100f